Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq439 161 1e-34 seq12 138 1e-27 seq55 125 9e-24 >seq439 Length=25118 Score = 161 bits (178), Expect = 1e-34 Identities = 785/1237 (63%), Gaps = 14/1237 (1%) Strand=Plus/Plus Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAA 62544 |||||| || ||||| |||||||| ||||| || || || || | | |||| || || Sbjct 18082 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAA 18141 Query 62545 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 62604 ||||| || | ||||| |||||||| || | || |||||||| ||||||| || | Sbjct 18142 CGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCG 18201 Query 62605 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 62664 || | | | || || | ||| || | || || || || | || || | || Sbjct 18202 GTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTT 18261 Query 62665 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA-TCAAATCGCC 62723 || ||||| | | || |||||||| || | ||| || | | | ||| | || Sbjct 18262 GTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAACTCC 18321 Query 62724 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62783 | || || ||| || | || ||||| |||| ||| || || || || |||| | Sbjct 18322 CTCCTCC-ACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGG 18380 Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843 | || || | || | |||| ||| | ||||| | ||| || || | || | Sbjct 18381 GAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCT 18440 Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903 | || || || |||| || ||||| || || ||||| || ||| ||||||| Sbjct 18441 GCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAA 18500 Query 62904 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTC 62962 |||| | || | ||||| ||| | | || | || || || | || | | | Sbjct 18501 TCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGG-GCGTTGATGGTC--TTGCGAGCAC 18557 Query 62963 TT--TTCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 ||| | ||||| | ||| | || || ||||| || ||||| | || Sbjct 18558 GCCCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCGTA 18615 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 ||||||||| ||||| ||||| | ||| ||||| || | ||| ||| | ||| Sbjct 18616 GAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTT 18675 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||| |||||||| || | ||| | || || || || || | | | || ||||| Sbjct 18676 CATGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTCGT 18734 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| ||||| |||||| | | | ||| | |||||||| |||| || Sbjct 18735 TACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGT 18794 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | || || ||| ||||||||| || | ||| | |||||| | || Sbjct 18795 AGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCAT 18854 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | ||||||||||| || ||||| |||||||| | |||||| || || ||| |||| Sbjct 18855 TGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGC 18914 Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 | | ||||| ||||| || | || || || || ||| || ||||| Sbjct 18915 TGTTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGC 18974 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 | || || | || || || || ||||||||||| || |||||| ||| | | Sbjct 18975 AGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACA 19034 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || |||| ||| | || || || ||||| || | || || | ||||| Sbjct 19035 GGAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGT 19094 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 |||| || | || | || | || | ||||||||| | ||||| | || || | | Sbjct 19095 GAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCT 19154 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 || || || | || || ||||| | ||| || || || | ||| || | ||| | Sbjct 19155 TGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCAT 19214 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 | | || | ||| | | ||||| || || || || || |||| ||| |||| Sbjct 19215 TGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGT 19274 Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 | || |||| ||||| |||||||||| | ||||| Sbjct 19275 CCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 >seq12 Length=196586 Score = 138 bits (152), Expect = 1e-27 Identities = 307/454 (68%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||||||| ||| | |||||||| | ||||| | ||||| || || | || Sbjct 58305 CACGCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGA 58364 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||||| Sbjct 58365 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGATCCCGAAAAGAA 58423 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-----ATAACCGGCGC-TGTC 32833 ||| || || || || || || |||| || | ||| | || || ||| ||| Sbjct 58424 AATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTC 58483 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | |||| | | ||||| | |||||||| | ||||| || || ||||| ||||| Sbjct 58484 A---CACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGC 58540 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 | | || | || || ||| | | || || | || || || || | || || Sbjct 58541 ACGCAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTA 58600 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 | ||||| |||||||| |||||||| || || || ||||||||||| | ||| || | Sbjct 58601 GACCTCCGAGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGG 58660 Query 33014 AATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||| || || | | || |||| || | || || ||||| || ||||| ||| Sbjct 58661 CACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTG 58718 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33105 || || || || || | || || || || |||| Sbjct 58719 GCAGCGAAGAAAGCGAGCACGTGCTTGATGAAAT 58752 >seq55 Length=127487 Score = 125 bits (138), Expect = 9e-24 Identities = 305/457 (67%), Gaps = 9/457 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || |||||||| ||| | |||||||| | || || | ||||| || | Sbjct 35740 ACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGA 35799 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | |||| || ||||| ||||| ||||| || ||||| || || || ||| || ||||| Sbjct 35800 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGA-GCAGAACGATCCC 35858 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 32828 || ||||| || || || ||||| || || || | || | ||| ||| | | Sbjct 35859 GAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACA 35918 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | || |||| | ||||||| | |||||||||| ||||| || || ||||| Sbjct 35919 CGAGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCG 35978 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || ||| | ||||| | ||| || | || || | || || || |||| || Sbjct 35979 ATGGCACGCAGCAGATAATCTTTCTCGACTGTGTCCTTGATGTACGTGTCGATCAGCAGG 36038 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || | |||||| || || || |||||||| || || || ||||||||||| | ||| Sbjct 36039 GAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGAAACCGTAGAAGCAGCGGGCC 36098 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGT 33066 |||| | ||| | || | | || |||| |||| || || || || || |||| Sbjct 36099 TCGGGCACCTGGATCTCATTGCTGAA--GTTCATGGCTAGGTTCTCGTTAACGATACCGT 36156 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||| ||||| ||||| || | || || || || || Sbjct 36157 CACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAA 36193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610123855200