Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq168 113 4e-20 seq1294 95.1 1e-14 seq439 84.2 2e-11 >seq168 Length=56023 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| ||| | || ||||| ||||| | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || || Sbjct 52013 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52072 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || |||||| Sbjct 52073 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52132 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 52133 ATTCAGAAGGAGTCGAC 52149 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| ||| | || ||||| ||||| | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || || Sbjct 52241 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52300 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || |||||| Sbjct 52301 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52360 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || | || ||||||| ||| Sbjct 52361 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGGT 52408 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| | || || || ||||| | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || Sbjct 51782 TCGGATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 51841 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | |||||| |||||| | || ||| Sbjct 51842 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTAC 51901 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 51902 AACATCCAGAAGGAGTCGAC 51921 >seq1294 Length=4314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || ||| |||| || || ||||| | | Sbjct 4065 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 4124 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| ||||| || || || Sbjct 4125 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4184 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| || || | ||| |||||| Sbjct 4185 CAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 4244 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| ||||||| || Sbjct 4245 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGG 4291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || ||| |||| || || ||||| | | Sbjct 3837 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 3896 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| ||||| || || || Sbjct 3897 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 3956 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| || || | ||| |||||| Sbjct 3957 CAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 4016 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| ||||||| || Sbjct 4017 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGG 4063 >seq439 Length=25118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 237/358 (66%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 128920 GATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACT 128979 || ||||| || ||| ||| ||| || ||||||| || | | || | ||| Sbjct 17573 GACTGACTCTGGCAAATGTAGGCGCCACGGTCGGCAGACAGGTCCAGCACAGCCTTCTGC 17632 Query 128980 TTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTC 129039 || || ||||||||||| ||||| ||| | ||||| | || ||| | | | |||| Sbjct 17633 TTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATTACCTTCACGTTC 17692 Query 129040 TGCAC---GCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAAT-- 129094 ||||| || ||||| ||| | || | ||| |||| | | || || || || Sbjct 17693 TGCACGGAGCCGCCGTCGTT---CAGGATCTGGTTGCGCACC--TCCGGCGTCCAGATAC 17747 Query 129095 TCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CTTGAAAGTCACCCGCCAAA 129153 ||| | ||||| |||| ||| ||| ||||| | | | || || || || || | Sbjct 17748 CCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTG-AACTCGCCTGCAAGC 17806 Query 129154 ACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATT 129213 || || || ||| |||||| ||| ||||||| | || || |||||||| | || Sbjct 17807 ACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATC 17866 Query 129214 TGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCT 129271 ||||| || | || || |||||| |||||| |||||||| || | |||||||| Sbjct 17867 TGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCT 17924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713871168530