Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 154 3e-32 seq12 152 1e-31 seq55 125 1e-23 seq1092 102 2e-16 seq142 95.1 2e-14 seq85 86.0 1e-11 seq74 84.2 4e-11 >seq4 Length=231283 Score = 154 bits (170), Expect = 3e-32 Identities = 651/1009 (65%), Gaps = 33/1009 (3%) Strand=Plus/Plus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 ||||||| |||||||| || || ||||| | |||||| || ||| ||||||| Sbjct 216904 ACTGTGAGTTCTCGCTTGCCTACGGTGGTATGATTCTTCTGAACAACGCCCGCCTTCGTC 216963 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 | |||||||| |||| || ||||| || ||||| || |||||| || || | Sbjct 216964 TGAAGCGTGGACACCGTTACGGTCTGTGTGGCCCCAACGGTTGTGGTAAGTCGACCCTGA 217023 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAAC-GCATCTGAGGTAAGGACA 279539 ||||||||||| | ||||| ||||| || || || || | | || | ||| | | ||| Sbjct 217024 TGCGCGCCATTTCCAACGGCCAGCTTGAGGGTTTCCCCAGCCGCGAC-GAGCTGAAGACC 217082 Query 279540 GTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTA 279599 |||| || |||||| || | | | || | || | | || | |||||| | Sbjct 217083 GTGTTCGTTGAGCACAACCTTCAGGCTTCGGAGGCCGAGCTCTCGGTTGTGGACTTCATC 217142 Query 279600 ACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAG 279659 | || || ||| || | | || | | | ||||| ||| | | || | Sbjct 217143 TTGA---ACGATGAGGACCTGAAGAACACCCCGCGCGAGGAGGTCAAGGACACTCTCG-- 217197 Query 279660 GCCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGT 279716 ||| | | ||| | || |||| || | || || | || || |||||| Sbjct 217198 -CCAGCGTCGGTTTCACCCCGGAGATGCAGGCTCAGGGTGTTGGCACCCTTTCTGGTGGT 217256 Query 279717 TGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTT 279776 ||||||||||| |||| || | || || || || | | ||||| | || || ||| Sbjct 217257 TGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATTCTGCTTCTT 217316 Query 279777 GATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACC 279836 |||||||| || |||||| |||| || ||||| |||||||| | | |||||| ||| Sbjct 217317 GATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAACTACCTGACC 217376 Query 279837 AGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 || || ||| || | || |||| || || ||||||||||| ||||| || || Sbjct 217377 AGCTTGCCGAACGTGACCTCTATCATGGTGTCGCACGACTCTGGTTTCCTTGACAAGGTC 217436 Query 279897 TGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAAC 279953 ||| | ||| || ||||| || | || |||||| ||| |||| |||||| Sbjct 217437 TGCACCAACATTATCCACTACGAAACCCGTAAGCTGAAGATCTACAAG------GGCAAC 217490 Query 279954 CTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || || ||||||| || |||||||| |||||||| || || || | Sbjct 217491 CTTTCGAAGTTCGTGGAGCAGAAGCCTGAGGCTAAGGCCTACTACGAGCTCGAGTCGGAG 217550 Query 280014 ACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC-ATCAAAGGATCG 280072 | || |||| | ||||| ||||| || || || | | |||| | ||| || | Sbjct 217551 AACGTGAAGTTCGTTTTCCCGGAGCCTGGTTTCCTTGCTGATATCAAGAACAAGGGTAAG 217610 Query 280073 CGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA--CATCT-T 280129 | || |||| || | ||| | || || | |||||| | || | Sbjct 217611 CCCA-TCATTCGTCTGACGAACTGCTCGTACCAGTACCCGGGTACCCCCAAGCCGTCGAT 217669 Query 280130 CAGCAG--TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTGGTGTCATTGGACCCAA 280186 || || | ||| | | || ||| | | || | || | || | |||||||| Sbjct 217670 CAACAACATTTCAG-TGACGTGTGCTCTGTCGAGTC--GTATCGCCGTGCTGGGACCCAA 217726 Query 280187 TGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGG 280246 ||||| ||||||||||| | ||||| | |||||||| ||| || | || || | Sbjct 217727 CGGTGCCGGTAAGTCTACGATGATCAAGATGCTGACTGGTGAGGTGGAGCCGACC-AGTG 217785 Query 280247 GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACC 280305 | | | | |||||||| || |||||| | || ||||| ||||||||||||||||||| Sbjct 217786 GCCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCTCAGCACGCTTTCCACC 217845 Query 280306 ACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 | |||||| ||||| ||| |||| | ||||| ||||| |||||||| Sbjct 217846 ATATCGAGTCGCACCTTGACGAGACTGCCAACCAGTACATCCAGTGGCG 217894 >seq12 Length=196586 Score = 152 bits (168), Expect = 1e-31 Identities = 564/863 (65%), Gaps = 33/863 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| || Sbjct 58038 TCGAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 58097 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || | ||| ||||| ||| || | ||| | | |||||| ||||||||||| | Sbjct 58098 GCGTGGTAGATCTTGGACACGCCCAGAGAGTAC-AGCAGGCGGTCAGCCACAAACTCGAT 58156 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGAC---AAGGAATTGCCTCAC 251737 ||||| | ||| || | |||||||||||||||| | || ||| | | || ||| Sbjct 58157 GTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCCACCGGAAGCGAATCCCGCAC 58216 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT----TGCCTTCACCTGTGCC 251793 | || || | ||| | | || || | || || || | | || | | Sbjct 58217 A----AACTCGTGCTCGATCACCACAGCGTTGCGAACGATCTCATGGATGCGGCTCTCC- 58271 Query 251794 AGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACC 251852 | ||||||||| | ||||| || |||||||| | ||| ||| | || |||| || Sbjct 58272 ---GGCAGCTTGTTGACGAGCTTGGAATACAGGAGGCACGCGAAATCGGTG-TGCATGCC 58327 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| || || |||| |||||| || | | ||| |||||||| | || || ||| | Sbjct 58328 CTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTT 58387 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACA-CCCATG 251971 |||||||||||| | ||| |||||||| || || | | ||||| || | || | | | Sbjct 58388 GAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCAC-CGCAGCGAAAG 58446 Query 251972 CAACAAGGCGCTCAGCAAACGACTTGTCCTGC--GACA-AGAACTTCTGTGCCCATGCTG 252028 |||| || ||||| || | || | || | || | || | | ||||| | Sbjct 58447 CAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACACCACCTGAGGGCCCAGTTAG 58506 Query 252029 CCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCA 252087 ||||||| || ||| || || ||||| ||| | ||| | | ||| ||| Sbjct 58507 CCTTCTTCTGCACACAGGGAATGGTCTCGATAGCA-CGCAGAAGGTGGTCCTTCTCAATG 58565 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 ||||| |||| || || | || || ||||| | |||||| || ||| || || Sbjct 58566 GTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAATGTTCTCAATG 58625 Query 252148 AACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTG 252207 |||||| | | ||||| || || ||| | || || || ||||| Sbjct 58626 GCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCATTGCTGAAGTTC 58685 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | || | |||||| |||| || || |||||| | || ||||| | || | | |||| Sbjct 58686 ATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGAGCACGTGCTTG 58745 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 ||||| || ||||| | || |||| ||| | |||||| | ||| || ||| Sbjct 58746 ATGAAATGGCGCTCGTTATCCGTGAGGTTG---CCCCAGTCCTTCAGGTCGTGCACGAGA 58802 Query 252328 GGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATC 252386 || || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 58803 TCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACATCTGC-CACACCTC 58861 Query 252387 AGGGTACTTGATTGGGAA-AGCA 252408 | | | || ||| ||||| |||| Sbjct 58862 ATGCTCCTGGATGGGGAAGAGCA 58884 >seq55 Length=127487 Score = 125 bits (138), Expect = 1e-23 Identities = 553/858 (64%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| || ||||| | ||||| ||||||| || || | Sbjct 35481 TCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAATGGATTCTTC 35540 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAG-ATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||||| || |||| || ||| | ||| |||||||| ||||| | Sbjct 35541 ACGTTGTAAATCTTGGACACACCCAGTGAGTA--AAGCAGGCGATCTGCCACGAACTCAA 35598 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| || || ||| | | || || Sbjct 35599 TGTACTGGCACATGAGCGCTGAGTTCATGCCGATCA-ACTCCACAGGGAGAGAGTCGCAC 35657 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | || ||| || || || | ||| | | || | | | | Sbjct 35658 ACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTTCGTGTACGCGGCTCTCCGGC 35717 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 ||||||||| | ||||| ||||||| ||| | || ||| | || ||||| ||||||| Sbjct 35718 AGCTTGTTCACGAGCTTCGAGTACATGAGGCAGGCGAAATCCGT--GTGCATTCCCTCGT 35775 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| | |||||| || | | || |||||||| | || || ||| |||||| Sbjct 35776 CCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCC 35835 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || ||||| ||||| | | ||||| || | | || | | Sbjct 35836 AGAAGATCGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCA 35895 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGA----CA-AGAACTTCTGTGCCCATGCTGCCTT 252032 | ||||| | | || | | ||| || | || | | ||||| ||||| Sbjct 35896 GCCGCTCCGGGTAAGA--AGACACACGAGGATCACACCACCTGAGAGCCCAGTTCGCCTT 35953 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 |||| || ||||| || ||||| ||| | ||| | | |||| | ||| Sbjct 35954 CTTTTGCACACACGGGATCGTCTCGATGGCACGCAGCAGATAATCTTTCTCGACTGTGTC 36013 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || || | ||| || ||||| | ||||| ||||| || || || Sbjct 36014 CTTGATGTACGTGTCGATCAGCAGGGAGTAAACTTCCGAGTGGATATTCTCAATGGCTAT 36073 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| || | ||||| || || || | || || || ||||| | || Sbjct 36074 CTGGAAACCGTAGAAGCAGCGGGCCTCGGGCACCTGGATCTCATTGCTGAAGTTCATGGC 36133 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || || || || || |||| || ||| | || | | ||||||||| Sbjct 36134 TAGGTTCTCGTTAACGATACCGTCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAA 36193 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 ||| ||||||| ||| | |||||| | ||||||| | ||| || ||| | Sbjct 36194 GTGGCGCTCATTGTCCGTCAGCTTGGC---CCAGTCGTTCAGGTCGTGTACCAGGTCGAG 36250 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391 ||| || | |||||||| | | | | || ||||||||||| ||| |||| || | | Sbjct 36251 TTCCTCGGCAGTCCAGAAAGATGCCTCGGCTTTCTTGTACATCTGC-CACACGTCGTGCT 36309 Query 252392 ACTTGATTGGGAA-AGCA 252408 || ||| ||||| |||| Sbjct 36310 CCTGGATGGGGAAGAGCA 36327 >seq1092 Length=5749 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 337 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 278 Query 142563 CCCCAC 142568 |||||| Sbjct 277 CCCCAC 272 >seq142 Length=62677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 237/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||| | |||| || ||||| || |||| |||||| ||||| || ||| Sbjct 19587 AAGGTTGCACAGCTCGCTGGATACGTATCTGAGCACTCTGCCTACCACCACGGCGAACAG 19646 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 |||||||| || || ||| |||||| ||||| | || || || ||||| || || Sbjct 19647 AGTCTGCAAGGCTGTATCGTAAACATGGCGCAGGATTTCGTTGGAAGCAACAATATCCAC 19706 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 | ||| ||||| |||||||| ||| | ||| | |||| || ||||| || | Sbjct 19707 CTTCTGTCCCCCATTGGTCAGTTCGGTACACGTTTGATGGGCGGCAAGGACGCGGCCAGT 19766 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC---AGGCC 218892 || | ||||| || || || ||| || | ||||| | | | | ||| || | Sbjct 19767 GCTCGTTATATTTTCACCAACTTGGAGCAGCTTACGCGTCGAATCTACGATCCTTTGGAC 19826 Query 218893 GATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTAT 218952 ||||| || ||| ||||| || || || || || || ||||| || || |||||| Sbjct 19827 AATGAT-TG--CCTGAAGTACCTCGATGAAGACGGCCAGTCCATTGAACCGGAATGGTAT 19883 Query 218953 GTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 | || ||| || | |||| || || || | |||||||| || ||||| Sbjct 19884 ATCCCGATTATCCCCATGGTGCTGGTCAACGGCAGTGACGGTATCGGAAC-GGGTT 19938 >seq85 Length=83305 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || || ||||| ||||| ||||||||||| || |||||||||| || ||| ||||| | Sbjct 55689 ATCCGTGGTCTCTCTGGTGGCCAGAAGGTGAAGCTTGTCATCGCTGCTGCTATGTGGAAC 55630 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCG 280819 | ||| ||| || |||| || || ||||| || ||||| |||| || Sbjct 55629 CGCCCGCACTTGCTCGTGCTGGATGAGCCGACGAACTACTTGGATCG 55583 >seq74 Length=89887 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 1224 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 1283 Query 142565 CCAC 142568 |||| Sbjct 1284 CCAC 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800426782842