Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12 316 4e-81 seq439 295 1e-74 seq55 291 2e-73 >seq12 Length=196586 Score = 316 bits (350), Expect = 4e-81 Identities = 578/840 (69%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||||||| || ||| |||||| || |||||| |||| || | | ||| Sbjct 58849 ATGTACAAGAAGGCGGAGGCTTCCTTCTGGACGGCTGAGGAGCTTGATCTCGTGCACGAC 58790 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | | ||||| || | || ||||| |||| |||| || | || || Sbjct 58789 CTGAAGGACTGGGGCAACCTCACGGATAACGAGCGCCATTTCATCAAGCACGTGCTCGCT 58730 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||| ||| ||||| || || || ||||||||||||| | |||| || ||| Sbjct 58729 TTCTTCGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAG 58670 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| ||| || ||||||||||||||||||||||| ||||| |||||| | ||| Sbjct 58669 GTGCAGGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATTCAC 58610 Query 42549 TCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || ||||| ||| | ||||||| ||||||||||| ||| || | ||| || Sbjct 58609 TCGGAGGTCTACTCG---CTGCTCATCGACACGTACATCAAGGACACCATTGAGAAGGAC 58553 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || | || || ||||| || ||||| | |||||||||| ||||||| ||| Sbjct 58552 CACCTTCTGCGTGCTATCGAGACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTC 58493 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 | ||| || | | || | | || ||| | ||||| || || | || || Sbjct 58492 AGGTGGTGTGACCCGCGTGTGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTG 58433 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTC 42784 |||||||| ||||| ||||| ||||| ||||||||||||||||||| || || || Sbjct 58432 GAGGGCATTTTCTTTTCGGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC 58373 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || || | |||||||||||| ||||| ||| | |||||||| |||| | || Sbjct 58372 -ATGCCTGGTCTGAGCTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGA 58314 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 || || |||||||||| || | | | ||| |||||| || || || ||| Sbjct 58313 TTTCGCGTGCCTCCTGTATTCCAAGCTCGTCA---ACAAGCTGCCGGAGAGCCGCATCCA 58257 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||| | | || |||| ||||||| | ||||| | | | ||||| || || Sbjct 58256 TGAGATCGTTCGCAACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGT 58197 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | ||| | ||||||||| | ||||||||| |||||||| ||| || || |||| Sbjct 58196 GGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCG 58137 Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--GTGCCCCTTCGACTTT 43082 || |||| | |||| | | ||||| |||||| | ||| ||||||| Sbjct 58136 CCTGCTGTACTCTCTGGGCGTGTCCAAGATCTAC--CACGCCAAGAACCCGTTCGACTGG 58079 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| | |||||| | |||||||||||||||| ||||||||||| || | ||| ||| Sbjct 58078 ATGGACATGATCTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 58019 >seq439 Length=25118 Score = 295 bits (326), Expect = 1e-74 Identities = 1091/1686 (65%), Gaps = 84/1686 (5%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || |||||||||||| |||||||| || | |||||||| || |||||||| ||| || Sbjct 17476 CATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAG 17535 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | |||||| | | || |||||| ||||| ||||| Sbjct 17536 CTTGCTAATCGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 17583 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | | | ||| |||| || || || | || | | | ||||||| ||||| Sbjct 17584 GCAAATGTAGG-CGCCACGGTCGGCAGACAGGTCCAGCACAGCCTTCTGCTTGATCTCCC 17642 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAG 244012 || |||||||||| | ||||| ||| || |||| ||||| | ||||||||| ||| Sbjct 17643 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATTACCTTC-ACGTTCTGCACGGAG 17701 Query 244013 CCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAG 244071 || || | | || |||| |||||| | |||| | |||| | || || || Sbjct 17702 CCGCCGTCGTTCAGGATCTGGTTGCGCACCTCCGGCGTCCAGATACCCAGATCGATC-AG 17760 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | | | | ||||| | ||||||| | | ||||| || | ||||| || || | ||| Sbjct 17761 CTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACGGTTGTA 17820 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || ||||||||| ||| |||||||||| ||||| || || || Sbjct 17821 CATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGC 17880 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC 244250 ||||||||||| | ||||||||| ||| | | |||||| | ||| || || Sbjct 17881 CGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTT---GATCACGTTCTC 17937 Query 244251 --TGAGCTCGTTCCAGTCCCACATGCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATGT 244307 |||| ||||||||||| ||| || || | | || || |||||||||| Sbjct 17938 CTTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACG-------CCCCACATGT 17990 Query 244308 CAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGC 244367 | ||||| | | |||||||| | || ||||| | | ||| ||||| || Sbjct 17991 CGAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATAGGGCCCCAACT 18050 Query 244368 GCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATC 244426 || || | || || | | || | || |||||||||||||||||||||| || Sbjct 18051 CCTTCGCAATCTC-CATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTC 18109 Query 244427 TTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCG 244486 ||||| | |||| ||||| || ||| || | ||||| ||||| |||| Sbjct 18110 TTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAACGGATAGTTCATCAGAATGAACGCGTCA 18169 Query 244487 GCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG---GCT 244543 ||||| ||||| || ||||| |||| ||| | ||| ||| ||||||| | || || Sbjct 18170 GCCAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGA---CTTGCGAGCC 18226 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 || ||||||||| ||||| ||||||| |||||||| || || || || | || | Sbjct 18227 TCCACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTG 18286 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 || || ||| |||| ||| || | | | ||| ||||| Sbjct 18287 ACCACCTCGTACAGCTTCTGGTAGCTGAAAAC-------TCCC------------TCCTC 18327 Query 244664 -ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || |||| | ||| ||||| ||||| ||||| || ||||| || || | || Sbjct 18328 CACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGT 18387 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| | | ||| ||| | ||||||| | ||| || ||||||| ||| || || Sbjct 18388 GTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCTGCTGGTT 18447 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 ||| ||| ||| |||||||||||||||||||| ||| | || || || | |||||| Sbjct 18448 GGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGC 18507 Query 244843 GACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 | | |||| ||| | ||| || | | || |||| ||| ||||||| || || Sbjct 18508 GTCAAGGATCGC-GAACCACAGCTGCTGGGCGTTGATGGTCTTGCGAGCACGCCCTTCCT 18566 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGG 244960 |||||| ||| |||| ||| ||||| |||||| ||||| || || || | Sbjct 18567 TCTCGTACTTCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAG 18626 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | | || || | | |||||||| ||| | ||| ||||| | ||||||||| Sbjct 18627 CTTCA-TTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGA 18685 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT---GCTCGTCCGAGCCAGTG 245077 ||||| | ||| | || | ||| | ||| | | | | |||||| | ||| Sbjct 18686 TCGGGCACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCTCGT----TACCGTG 18741 Query 245078 -TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||| | || |||| || || || || ||| ||||||| ||||||| ||||| || Sbjct 18742 ATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGC 18801 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGA 245192 || || ||| |||||| ||||||||||||| | | |||||| | |||| Sbjct 18802 GAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCA----CGTAGCGAGCGGTATCATTGA 18857 Query 245193 AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252 ||| | || | || | || || || ||| || || ||||| ||||||| | Sbjct 18858 AGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGT 18917 Query 245253 CCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGG 245312 | | | | || ||| || ||||| | || || || |||||||||| || Sbjct 18918 TCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGG 18977 Query 245313 CGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAA 245372 | || ||| | |||||| |||||||| || ||| || ||| | ||| | Sbjct 18978 CACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGA 19037 Query 245373 AGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG--TTGAACAGAGTGGGGCTGGCGTG 245430 |||| ||||||| || || | | | || || || |||||||| || ||| | ||||| Sbjct 19038 AGCAAGAGGACAATTGCGG--TCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTG 19095 Query 245431 GGTAAA 245436 || || Sbjct 19096 AGTGAA 19101 >seq55 Length=127487 Score = 291 bits (322), Expect = 2e-73 Identities = 582/859 (68%), Gaps = 5/859 (1%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || ||| | ||| ||||||||||| || || || |||||| ||| Sbjct 36316 ATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCCGAGGCATCTTTCTGGACTGCC 36257 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 ||||| | ||||||| | ||| | || ||||| ||| | || || || Sbjct 36256 GAGGAACTCGACCTGGTACACGACCTGAACGACTGGGCCAAGCTGACGGACAATGAGCGC 36197 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || ||||| ||||| || |||||| || || || |||||| Sbjct 36196 CACTTCATCAAGCACGTGCTCGCCTTTTTCGCAGCAAGTGACGGTATCGTTAACGAGAAC 36137 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || |||| | |||| || ||| | ||| ||||| |||||||||||||| ||| Sbjct 36136 CTAGCCATGAACTTCAGCAATGAGATCCAGGTGCCCGAGGCCCGCTGCTTCTACGGTTTC 36077 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||||||||||| ||||| | ||||| || || ||| || ||| || ||||||||||| Sbjct 36076 CAGATAGCCATTGAGAATATCCACTCGGAAGTTTACTCCCTGCTGATCGACACGTACATC 36017 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 ||| | |||||| | ||| | ||||| |||||||| || || | | Sbjct 36016 AAGGACACAGTCGAGAAAGATTATCTGCTGCGTGCCATCGAGACGATCCCGTGTGTGCAA 35957 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||| ||||||| |||| ||| || || | | | | | ||| || Sbjct 35956 AAGAAGGCGAACTGGGCTCTCAGGTGGTGTGATCCTCGTGTGTCTTCTTACCCGGAGCGG 35897 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | || || | || || |||||||||||||||||||| | ||| ||| |||||| Sbjct 35896 CTGCTGGCGTTCGCAGCAGTGGAGGGCATCTTCTTCTCGGGATCGTTCTGCTCGATCTTC 35837 Query 42765 TGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||||||| || || || ||||| || |||| |||||||||||| | |||||| | Sbjct 35836 TGGCTCAAGAAGCGCGGCCTC-ATGCCTGGTCTCAGCTTCTCGAACGAGATGATCAGCCG 35778 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||||||||| |||| | ||| || ||||||||| ||| ||||| | ||| | |||| Sbjct 35777 GGACGAGGGAATGCACACGGATTTCGCCTGCCTCATGTACTCGA---AGCTCGTGAACAA 35721 Query 42884 GCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || || || || || | | |||||| || || || || ||| | ||||| Sbjct 35720 GCTGCCGGAGAGCCGCGTACACGAAATCATCCGCGACGCTGTCACCATTGAGCACGAGTT 35661 Query 42944 CCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 | | | || || || ||| || ||||||||||| | ||||||||| |||| Sbjct 35660 CGTGTGCGACTCTCTCCCTGTGGAGTTGATCGGCATGAACTCAGCGCTCATGTGCCAGTA 35601 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 ||| ||| ||| || || | || || | | ||||| | | | |||||| Sbjct 35600 CATTGAGTTCGTGGCAGATCGCCTGCTTTACTCACTGGGTGTGTCCAAGATTTACAACGT 35541 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | | || ||||||| ||||| | |||||| | |||||||||| ||||||||||| Sbjct 35540 GAAGAATCCATTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACAAACTTTTTCGA 35481 Query 43124 GAAGCGCGTCGCCGACTAC 43142 ||| || |||| || ||| Sbjct 35480 GAAACGGGTCGGTGAGTAC 35462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306596689120