Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1294 132 1e-25 seq122 129 1e-24 seq168 113 1e-19 seq192 87.8 4e-12 >seq1294 Length=4314 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| |||| || || || |||| || || || ||||| || |||| Sbjct 4067 CATG-CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 4009 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || |||||||||| ||||| || | Sbjct 4008 CGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAG 3949 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || ||| |||||||| || ||||| || || | Sbjct 3948 GAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCT 3889 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || ||||||||||||||||| |||| |||||| ||||| ||||||||| Sbjct 3888 CCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 3836 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| |||| || || || |||| || || || ||||| || |||| Sbjct 4295 CATG-CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGT 4237 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || |||||||||| ||||| || | Sbjct 4236 CGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAG 4177 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || ||||| || ||| |||||||| || ||||| || || | Sbjct 4176 GAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCT 4117 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||||||||||||||| |||| |||||| || || |||||||| Sbjct 4116 CCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 >seq122 Length=66504 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 11080 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 11021 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | ||||||||||| || |||||||||||| || || || || Sbjct 11020 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10961 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 10960 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10901 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 10900 ATCTGCATGAT 10890 >seq168 Length=56023 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || || || | ||| || || ||||| || |||| Sbjct 51955 CATG-CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 51897 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || | || || || ||||||||||||||||| || | Sbjct 51896 CACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 51837 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || ||| |||| ||||| || || ||||| || Sbjct 51836 GAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGC 51778 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| || || || ||||||||||| |||||||| Sbjct 51777 TCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 111 bits (122), Expect = 4e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || || || | ||| || || ||||| || ||||| Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || | ||| Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || ||| |||| ||||| || || ||||| || || || Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGCTCCAC 52229 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || |||| ||||||||||| |||||||| Sbjct 52228 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 104 bits (114), Expect = 6e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| || || || | ||| || || || || || |||| Sbjct 52183 CATG-CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT 52125 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||| || || || | || || || ||||||||||||||||| || | Sbjct 52124 CACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 52065 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || ||| |||| ||||| || || ||||| || Sbjct 52064 GAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTG-ACGTTGTCGATGGAATCCGACGGC 52006 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || |||| ||||||||||| |||||||| Sbjct 52005 TCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 >seq192 Length=66663 Score = 87.8 bits (96), Expect = 4e-12 Identities = 185/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || ||||| | ||| || ||| || || || ||||| | | ||| ||||| || | Sbjct 52514 ATGTATCGAGGACTGGCAGCATCTTTTCCTCCTTGCAACCGAGTACCAAACTGTCCGGAC 52455 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 || ||| | || ||||||| |||||| |||| || || | ||| || || ||| Sbjct 52454 GGATACAGCAGCGGGAGGTTATTGGAGCCGACAAAATCTTGCGCCATGTTGACAATCGTC 52395 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGA 325499 || ||||| ||||| ||||||||||| || | |||| ||||| |||||| | Sbjct 52394 GAGTGTAGAGAAGCTTCTCCATGGTGATACGCCGTGTGCTCACTGCA--GTAACCAGCCA 52337 Query 325500 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCC 325559 || || || ||||| || |||| || || ||||| ||| | | | | ||| |||| Sbjct 52336 GTTGCGCCACTTTCACTTCACTCGTTAATTTCCGCTTCAAACAGGCAAAAAGCACCTTCC 52277 Query 325560 GTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 | || || |||| ||||| || ||||| || Sbjct 52276 GCTGCGAGATCTTGAGCCCATCGACAACCGAAGG 52243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179612654242636