Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 156 9e-33 seq12 132 1e-25 seq55 104 5e-17 seq192 96.9 8e-15 seq142 91.5 3e-13 >seq4 Length=231283 Score = 156 bits (172), Expect = 9e-33 Identities = 668/1041 (64%), Gaps = 45/1041 (4%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| |||||| Sbjct 217919 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 217860 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||| ||||||||||| ||||| |||||||| || | |||||| || || Sbjct 217859 GTGCGACTCGATATGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 217800 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || || |||| | |||| | || || |||| ||| || | || Sbjct 217799 CTTCCACACCTGGCCACTGGTCGGCTCCACCTCACCAGTCAGCATCTTGATCATCGTAGA 217740 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || || | ||| | || | || | | || | | || | Sbjct 217739 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATAC--GACTCGACAGAGCACACGTCACT 217682 Query 333554 --CACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 333610 | ||||| | | || |||||||| |||| | | | || ||| || Sbjct 217681 GAAATGTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTA-CGAGCAGTTCGTCAG 217623 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG------ 333664 ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 217622 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCCGGGAAAAC 217563 Query 333665 GAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 333724 |||||| ||||| ||| || |||| || ||||||| | | || || || Sbjct 217562 GAACTT-CACGT--TCTCCGACTCG---AGCTCGTAGTAGGCCTTAGCCTCAGGCTTCTG 217509 Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 || |||||||| || || || |||||||| |||||||||| || | |||||| || Sbjct 217508 CTCCACGAACTTCGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTTTCGTAGTG 217452 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 |||||| |||||| || ||| ||||| || |||||||| ||||| || | | | Sbjct 217451 GATAATGTTGGTGCAGACCTTGTCAAGGAAACCAGAGTCGTGCGACACCATGATAGAGGT 217392 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 |||| | | | || ||||||| ||| || ||||| ||||| ||| | Sbjct 217391 CACGTTCGGCAAGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCCAAG 217334 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || || Sbjct 217333 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 217274 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATA 334022 | |||||||| ||||| || || ||||| ||| || || || || || Sbjct 217273 TCCAGTTTCATCTTCCAACCACCAGAAAGGGTGCCAA------CACCCTGAGCCTGCATC 217220 Query 334023 TCAAAG--CCAACCGATTCT----AGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || | |||||| || ||||| || || || || | | | Sbjct 217219 TCCGGGGTGAAACCGACGCTGGCGAGAGTGTCCTTGACCTCCTCGCGCG------GGGTG 217166 Query 334077 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCG 334136 | ||| | | ||||| || |||||||| | | | | | | || || | Sbjct 217165 TTCTTCAGGTCCTCATCGTTCAAGATGAAGTCCACAACCGAGAGCTCGGCCTCCGAAGCC 217106 Query 334137 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGG-GAACCCTTCAAG 334195 | || | ||| || ||| | | || |||| | | ||| | || ||| || ||||| Sbjct 217105 TGAAGGTTGTGCTCAACGAACACGGTCTTCAGCTCGT-CGCGGCTGGGGAAACCCTCAAG 217047 Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255 ||| ||||| ||| ||||||||||| || || ||||| ||||| || |||||||| Sbjct 217046 CTGGCCGTTGGAAATGGCGCGCATCAGGGTCGACTTACCACAACCGTTGGGGCCACACAG 216987 Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACC 334315 |||||| |||| ||||||||||||| | || | |||||||||||||| | ||||| Sbjct 216986 ACCGTAACGGTGTCCACGCTTCAGACGAAGGCGGGCGTTGTTCAGAAGAATCATACCACC 216927 Query 334316 ATATGCCAGAGAAAATTCACA 334336 || || || || || ||||| Sbjct 216926 GTAGGCAAGCGAGAACTCACA 216906 >seq12 Length=196586 Score = 132 bits (146), Expect = 1e-25 Identities = 564/867 (65%), Gaps = 32/867 (4%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| |||||||| | ||| |||| ||| Sbjct 58879 TTCCCCATCCAGGAGCATGAGGTGTGGCAGATGTACAAGAAGGCGGAGGCTTCCTTCTGG 58820 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || | ||||| || ||| ||| ||| | |||||| || || |||| || Sbjct 58819 ACGGCTGAGGAGCTTGATCTCGT-GCACGACCTGAAGGACTGGGGC---AACCTCACGGA 58764 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 |||| || ||||||||||| ||| | || | ||| ||||| | | ||| ||||| || Sbjct 58763 TAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTTCGCTGCCAGCGACGGTATCGT 58704 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || ||| | ||||| || || || ||| || || || || || Sbjct 58703 GAACGAGAACCTGGCCATGAACTTCAGCAATGAGGTGCAGGTGCCTGAAGCTCGCTGCTT 58644 Query 243114 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTA 243169 || | | ||| | |||| | ||| || || || || || | || || | Sbjct 58643 CTACGGCTTCCAGATTGCCATTGA--GAAC--ATTCACTCGGAGGTCTACTCGCTGCTCA 58588 Query 243170 TCGACGCGCTTATTTCAGATGA-ACAAGAGCGAA--ACGAGCTTTTCGACGCCATCGAAA 243226 ||||| || || ||| | || || | | ||| || | ||| | || ||||| | Sbjct 58587 TCGACACG--TACATCA-AGGACACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAGA 58531 Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 |||||| || || || ||||| || ||||| | | |||| || || || | Sbjct 58530 CCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGCGTGTGT 58471 Query 243287 CATTT---GCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT-ATTCTGTTTTCCGGG 243342 ||| || |||||||| || || | | |||| || ||| ||| | ||||| || Sbjct 58470 CATCCTACGCGGAGCGTCTGGTTGCTTTCGC-TGCGGTGGAGGGCATTTTCTTTTCGGGA 58412 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 |||||| ||||||| ||||| ||| || | |||||||| || | | || Sbjct 58411 TCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCG 58352 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTC 243461 |||||| |||| || || ||||||||| | ||| | |||| ||| || ||||||| Sbjct 58351 AACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTGC-CTCCTGTATTC 58293 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGG-TCAAACAAATCAT-CACAGAAGCAGTT 243519 |||||| |||||||| || || || || | | ||| | | || | || || Sbjct 58292 CAAGCTCGTCAACAAGCTGCCGGA-GAGCCGCATCCATGAGATCGTTCGCA-ACGCTGTG 58235 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| | || || | | || | |||| ||| |||||||||||||| Sbjct 58234 GTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAGCTGATTGGCATGAACTCG 58175 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 | |||||| | ||||||||||| || || || |||||| | | | | || || | Sbjct 58174 GCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTGCTGTACTCTCTGGGCG-T 58116 Query 243640 GAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGG 243698 | ||| | ||| || |||||||||| || | || ||||| | || ||||| || || Sbjct 58115 GTCCAAGATCTACCACGCCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTACAGGG 58056 Query 243699 GAAAACTAACTTCTTCGAAAAGCGTGT 243725 || || ||||||||||| |||||||| Sbjct 58055 CAAGACCAACTTCTTCGAGAAGCGTGT 58029 >seq55 Length=127487 Score = 104 bits (114), Expect = 5e-17 Identities = 558/875 (64%), Gaps = 30/875 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||| | | || ||||| | ||||| ||||| || | |||| | || ||| Sbjct 36322 TTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCCGAGGCATCTTTCTGG 36263 Query 242935 ACCACCGAGGAAGTTCCTCTGA-ACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||||||| | ||| || | ||| | ||||||| | || || | || Sbjct 36262 ACTGCCGAGGAACTCGACCTGGTACAC-GACCTGAACGACTGGGCCAAG---CTGACGGA 36207 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 | | || || || |||||||| ||| | || | |||||||||| || ||||| || Sbjct 36206 CAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTTCGCAGCAAGTGACGGTATCGT 36147 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 | || || || | ||||| || || | ||| || ||||| || || Sbjct 36146 TAACGAGAACCTAGCCATGAACTTCAGCAATGAGATCCAGGTGCCCGAGGCCCGCTGCTT 36087 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | || ||| | | || || |||||| || ||| || | || || ||||| Sbjct 36086 CTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGAAGTTTACTCCCTGCTGATCGA 36027 Query 243174 CGCGCTTATTTCAGATGA-ACAAGAGCGAAACGAGCTTTTCGAC-----GCCATCGAAAA 243227 | || || ||| | || ||| | |||| | || || | |||||||| | Sbjct 36026 CACG--TACATCA-AGGACACAGTCGAGAAA---GATTATCTGCTGCGTGCCATCGAGAC 35973 Query 243228 CATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATC 243287 || ||| || || || ||||| || ||||||| | |||| || || || || Sbjct 35972 GATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGATCCTCGTGTGTC 35913 Query 243288 ATTTG---CTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | | | ||||| || | || | | || || || || | || || || Sbjct 35912 TTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCATCTTCTTCTCGGGATC 35853 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| | ||||| ||||| ||| || | |||||||| ||| | | || || Sbjct 35852 GTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAA 35793 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAA 243464 |||| | ||||| || |||||||| | ||| | |||| || ||||| || || Sbjct 35792 CGAGATGATCAGCCGGGACGAGGGAATGCACACGGATTTCGCCTGCCTCATGTACTCGAA 35733 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAAC-AAATCATCACAGAAGCAGTTGAAA 243523 |||| ||||||||| || || || | || |||||||| || || || | Sbjct 35732 GCTCGTGAACAAGCTGCCGGA-GAGCCGCGTACACGAAATCATCCGCGACGCTGTCACCA 35674 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT-ATTGGCATGAACTCTGAA 243582 || | || ||| | |||||| || | || || | || || ||||||||||| | Sbjct 35673 TTGAGCACGAGTTCGTGTGCGACTCTCTCCC-TGTGGAGTTGATCGGCATGAACTCAGCG 35615 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT--TTTCATCGCGCTTGGTTATG 243640 |||||| | |||||||| || ||||| || || ||| | ||| || | ||| | || Sbjct 35614 CTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGCCTGCTTTACTCAC---TGGGTGTG 35558 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||| | |||||| ||||| || || | || ||||| | || ||||| || || Sbjct 35557 TCCAAGATTTACAACGTGAAGAATCCATTCGACTGGATGGACATGATCTCGCTCCAGGGC 35498 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || || ||||| ||||| || || ||| |||| || Sbjct 35497 AAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTA 35463 >seq192 Length=66663 Score = 96.9 bits (106), Expect = 8e-15 Identities = 286/439 (65%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 |||||||| |||||||| || | || |||||||| | |||| || | |||||| Sbjct 52679 GACCAACCCGTACCGATACCTTCGGCTCCGTTCACCAGCAGCATCGGGATGATAGGCACG 52620 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCC 297397 || || | || || | | | ||| ||||| | | ||| || | ||||| Sbjct 52619 TAGTAAACGGGCTCAACCGGGAAACCATCATCGTCCGCATACCGTAGCAACGCGTCGTCT 52560 Query 297398 GTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTC 297457 || ||| ||| ||||||| | | ||| ||||| || ||||| | ||| Sbjct 52559 TCTTCAGGGAATACCAGTCGAGTGTACTTTTGAAGTAACGTGAAGATGTATCGAGGACTG 52500 Query 297458 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG 297517 || ||| || || || ||||| | | ||| ||||| || ||| ||| | | Sbjct 52499 GCAGCATCTTTTCCTCCTTGCAACCGAGTACCAAACTGTCCGGACGGATACAGCAGCGGG 52440 Query 297518 ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCT 297577 | ||||||| |||||| |||| || || | ||| || || ||| || ||||| ||| Sbjct 52439 AGGTTATTGGAGCCGACAAAATCTTGCGCCATGTTGACAATCGTCGAGTGTAGAGAAGCT 52380 Query 297578 TCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACCTTCA 297635 || ||||||||||| || | |||| ||||| |||||| | || || || |||| Sbjct 52379 TCTCCATGGTGATACGCCGTGTGCTCACTGCA--GTAACCAGCCAGTTGCGCCACTTTCA 52322 Query 297636 CGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGA 297695 | || |||| || || ||||| ||| | | | | ||| ||||| || || |||| Sbjct 52321 CTTCACTCGTTAATTTCCGCTTCAAACAGGCAAAAAGCACCTTCCGCTGCGAGATCTTGA 52262 Query 297696 AACCATCAACGACCGACGG 297714 ||||| || ||||| || Sbjct 52261 GCCCATCGACAACCGAAGG 52243 >seq142 Length=62677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || ||||| || ||||| || ||| ||| | | ||||||| Sbjct 19786 TTGGTGAAAATATAACGAGCACTGGCCGCGTCCTTGCCGCCCATCAAACGTGTACCGAAC 19727 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || || ||| || ||| || |||||||| || ||||||| || | ||| Sbjct 19726 TGACCAATGGGGGACAGAAGGTGGATATTGTTGCTTCCAACGAAATCCTGCGCCATGTTT 19667 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 ||||| ||||||||| |||||| ||||| ||||| ||||| | ||||| Sbjct 19666 ACGATACAGCCTTGCAGACTCTGTTCGCCGTGGTGGTAGGCAGAGTGCTCAGATACGTAT 19607 Query 297614 CCGCTGAACTGTGCAACCTT 297633 || || |||||||||||| Sbjct 19606 CCAGCGAGCTGTGCAACCTT 19587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840971144700