Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq439 239 5e-58 seq55 138 1e-27 seq12 123 3e-23 >seq439 Length=25118 Score = 239 bits (264), Expect = 5e-58 Identities = 940/1457 (65%), Gaps = 50/1457 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| |||||| ||||| | |||| ||||| |||| ||| || || || || Sbjct 17819 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAA 17878 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || |||||||| |||| || || ||| || ||||| | | | | | ||| Sbjct 17879 GCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTTCTCC 17938 Query 114062 TTGAGGGCGTCCCAGTCGTA-------GTTGA--GCTTTGTCTCCCCCTGCCACATATCA 114112 ||||||| ||||||| | | || || ||| | ||| ||||| || Sbjct 17939 TTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGC---GTCACGCCC---CACATGTCG 17992 Query 114113 AACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC- 114171 ||||||| || ||| | | |||||||| |||| || ||||| || |||||| |||| Sbjct 17993 AACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATA-GGGCCC-CAACT 18050 Query 114172 -CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 || ||| | || || ||| | || ||| || || ||||| || ||| Sbjct 18051 CCTTCGCAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCT 18110 Query 114231 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCC 114289 || | | | |||||| | | || |||| || || || ||| || | || Sbjct 18111 TGTTGAGTTCGCTGGCCTGCTGGCTCTCGAACG-GATAGTTCATCAGAATGAACGCGTCA 18169 Query 114290 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 114349 || ||||| || ||||||| || | ||||| || | ||| || ||||| ||||| | Sbjct 18170 GCCAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCC 18229 Query 114350 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 114409 ||||||| || | || ||||| ||| | || ||||| || || ||||| Sbjct 18230 ACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACC 18289 Query 114410 ATTTCATGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 114468 | || | ||||| | ||| | |||||| | ||| || || |||| || || Sbjct 18290 ACCTCGTACAGCTTCTGGTAGCTGAAAACTCC----CTCCTCCACGA---ACTTGGGGAG 18342 Query 114469 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 114528 |||| || |||| ||| ||||||| ||||| | |||||||| || | || Sbjct 18343 CGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTC 18402 Query 114529 CGTACACAAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||||| || |||| || || |||| ||||| || || || || ||| Sbjct 18403 ACAGCACAAGTTACTGGAACGG---ATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTT 18459 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 | || |||||||| |||||| | ||| ||||| || | |||| | || || || Sbjct 18460 AGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGC 18519 Query 114646 CTTCCAGACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACT 114701 ||| || | || | ||| | ||| ||| || ||||| |||| |||||||| Sbjct 18520 GAACCA--CAGCTGCTG--GGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTCTCGTACT 18575 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | |||||||| ||||||||||||||| | ||| |||| || || || | || | Sbjct 18576 TCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTAG 18635 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | ||||| | | ||| | ||| |||| || | ||||||||||| || || | || Sbjct 18636 GACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCC 18695 Query 114822 AGAGAGCTGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880 | | || |||| | || ||| || | | || | | || ||||| || | Sbjct 18696 ACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCT-CGTTACCGTGATTCTTGCGGAGA 18754 Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 114940 |||| || || | | ||| ||||||||||| |||||||| | |||| || ||||| Sbjct 18755 TCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTG 18814 Query 114941 CGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGA 114997 || | || |||||| || || | || || |||| || || | | ||| || Sbjct 18815 CGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGG 18874 Query 114998 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA 115057 || || |||| || ||||| || || || || || | || | || || Sbjct 18875 ATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTCGTCGCACGGATATTG 18934 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 || || || |||||||| || |||||||| ||||| || |||| | | | || Sbjct 18935 TGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTG 18994 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177 ||||||| || |||||||||||| ||| | || | |||||||| |||| ||| Sbjct 18995 TCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGC 19054 Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 115236 || | |||||||||||| ||||| || || || || ||||| |||| | || | || || Sbjct 19055 GGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA-AAACTTCTGCGA 19113 Query 115237 CATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 115296 |||| ||||| ||||||| | || ||||| | ||| ||||||| | || Sbjct 19114 CATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCAC 19173 Query 115297 CCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACT 115356 ||||||| ||| | ||| || ||||| || | |||| || | |||||| | Sbjct 19174 GCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGACACGGAAGAGGTATCC 19233 Query 115357 CTTCTCCAAGGTCTTGA 115373 ||||||||||||||| Sbjct 19234 TCTCTCCAAGGTCTTGA 19250 >seq55 Length=127487 Score = 138 bits (152), Expect = 1e-27 Identities = 365/543 (67%), Gaps = 21/543 (4%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || ||||| |||||||| ||||||||||| || | | | Sbjct 35451 CCAGCCTTGGAGTACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAG 35510 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTG 125865 || | ||||| | || ||||| ||||| ||| |||| | | ||| |||| | | Sbjct 35511 ATCATGTCCATCCAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAG 35570 Query 125866 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 125925 | || || ||||| | ||| |||||||||||| |||| | | |||||||| || Sbjct 35571 TAA-AGCAGGCGATCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCC 35629 Query 125926 GATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 ||| | | ||| ||||| | ||| | | |||| | | |||||| || || || | Sbjct 35630 GATCAACTCCACA-GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTCGC 35688 Query 125985 GCACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATT---GCGCAAAGTCTTGAAGAGT 126040 | | ||| |||| | | | | || ||| | | || | || | | | ||| Sbjct 35689 GGATGATTTCGTGTACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG 35747 Query 126041 TCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 126100 || ||| || || ||| | |||||||| ||| ||| | || |||||||||| Sbjct 35748 --CA-GGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAGCTG 35804 Query 126101 AGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAG 126160 || || |||||||| || |||||||| | |||||| |||| || || || ||||||||| Sbjct 35805 AGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAGAAG 35864 Query 126161 AAGATTCCCTCCACACACGCGAACGCAAAGAGACGCT-CAGCAAAGGAG---CGCGACTT 126216 ||||| |||||||| |||||||| | || |||| | | ||| || | ||| Sbjct 35865 AAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACACGA--- 35921 Query 126217 TGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT 126276 | ||| ||||| | | ||||| | |||||| || | | |||||||| |||| ||| Sbjct 35922 -GGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGAT 35980 Query 126277 CGC 126279 || Sbjct 35981 GGC 35983 >seq12 Length=196586 Score = 123 bits (136), Expect = 3e-23 Identities = 189/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| ||||| || |||||||||| ||| || |||||||| || |||||| Sbjct 58326 CCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 58385 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || ||||| ||||| || |||||||| ||||| Sbjct 58386 TTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAGCGAAA 58445 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 |||| |||||||| || |||| | | |||| ||||| | | ||||| | Sbjct 58446 GCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACACCACCTGAGGGCCCAGTTA 58505 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 126304 ||||| |||| | ||| || | ||||| ||| || | || | | ||| || || Sbjct 58506 GCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGTCCTTCTC-AAT 58564 Query 126305 GG-ATCTTTGATGTACTTATCTATGAG 126330 || || ||||||||| | || ||||| Sbjct 58565 GGTGTCCTTGATGTACGTGTCGATGAG 58591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332976366960