Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq168 113 5e-20 seq122 107 2e-18 seq1294 104 2e-17 >seq168 Length=56023 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | |||||| || || | |||||| || || || |||||||| || Sbjct 52408 ACCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 52349 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| || | || || ||||||||||| ||||| Sbjct 52348 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 52289 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 || || || || || || || |||||||| || || | | || | |||| |||| Sbjct 52288 GATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGC-TCCA 52230 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 52229 CGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| || || | |||||| || || ||||||||||| || Sbjct 52179 CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTC 52120 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || | || || ||||||||||| ||||| Sbjct 52119 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52060 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || |||||||| || || | | || | |||| ||||| Sbjct 52059 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGC-TCCAC 52001 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 52000 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| || || | |||||| || || || |||||||| || Sbjct 51951 CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 51892 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || | || || ||||||||||| ||||| Sbjct 51891 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 51832 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || |||||||| || || | | || | |||| ||||| Sbjct 51831 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGC-TCCAC 51773 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||| || | || || ||||| || ||||| || Sbjct 51772 GTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 51722 >seq122 Length=66504 Score = 107 bits (118), Expect = 2e-18 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 11080 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 11021 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || |||||||| || || || ||||| ||||| ||| || Sbjct 11020 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10961 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 10960 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 10903 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 10902 AGATCTGCAT 10893 >seq1294 Length=4314 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| || ||||| || |||| || || || || || |||||||| || Sbjct 4063 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4004 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | ||||||||||| |||||| Sbjct 4003 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 3944 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 3943 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGC-TCCAC 3885 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||| || |||||||| || ||||| || |||||| Sbjct 3884 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 3836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| || ||||| || |||| || || || || || |||||||| || Sbjct 4291 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4232 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || |||||||||||||| | || | ||||||||||| |||||| Sbjct 4231 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 4172 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 4171 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGC-TCCAC 4113 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||||||| || || || || ||||| Sbjct 4112 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627549763280