Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 141 9e-29 seq1294 109 5e-19 seq122 109 5e-19 seq168 104 2e-17 seq55 89.7 5e-13 >seq12 Length=196586 Score = 141 bits (156), Expect = 9e-29 Identities = 506/768 (66%), Gaps = 41/768 (5%) Strand=Plus/Minus Query 52089 GATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATC 52148 ||| |||||||| |||| |||||||||||| | || |||||||| ||| ||| | ||| Sbjct 58765 GATAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTTCGCTGCCAGCGACGGTATC 58706 Query 52149 GTGAACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAA 52205 |||||| ||||| ||| | | || ||| | | || | || | || || | Sbjct 58705 GTGAACGAGAACCTGGCCATGAACTTCA-GCAATG--AGGTGCAGGTGCCTGAAGCTCGC 58649 Query 52206 TACTTTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | ||| ||| ||| | | ||| ||||| | ||| ||||| Sbjct 58648 TGCTTCTACGGCTTCCAGATTGC-CATTGAGAACATTCACTCGGAGGTCTACTCGCTGCT 58590 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCAC-GAGCGCGACACGCTGCTGAATGCGTTCGAGC 52323 ||| || | || || || | || ||| ||| || ||| ||| ||||| Sbjct 58589 CATCGACACGTACATCAAGGAC-ACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAGA 58531 Query 52324 ACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA-----GAGCGA 52378 | | || || || | || |||||| | ||||| | | |||| || | | | Sbjct 58530 CCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGCGTGTGT 58471 Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438 || | | |||| | |||| |||| || ||||| || |||||| | || ||||| Sbjct 58470 CATC-CTACGCGG----AGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTC 58416 Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498 || ||| | ||||||| | | || | | ||| | ||||| || |||| || Sbjct 58415 GGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTT 58356 Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TA 52555 | |||||| | || || ||||| || ||||||| || || ||||||||| || Sbjct 58355 CTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCGCGTGCCTCCTGTA 58296 Query 52556 CTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACA--CG-ATCC-TGAGCATGTTCA 52611 | |||| | ||| | | || || |||| | || |||| |||| |||| Sbjct 58295 TTCCAAG---CTCGTCAAC---AAGCTGC---CGGAGAGCCGCATCCATGAGATCGTTCG 58245 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 | || |||| ||||| | |||||| | || |||| ||||| |||||| | | Sbjct 58244 CA-ACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAGCTGATTG 58186 Query 52672 GCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 |||||||| || | ||||||| ||||||||||||||||||| || || ||| | || | Sbjct 58185 GCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTGCT-GTAC 58127 Query 52732 AGCTC-GGGC-AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACAT 52789 ||| |||| | | ||| || | |||| || ||||| || | ||| ||| || Sbjct 58126 -TCTCTGGGCGTGTCCAAGATCTACCACGCCAAGAACCCGTTCGACTGGATGGACATGAT 58068 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| |||||||||||||||| ||||||||||| || |||||||| Sbjct 58067 CTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 58020 >seq1294 Length=4314 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||||| |||||| || || || |||| Sbjct 4258 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCG 4199 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| ||||| || || || ||||| || || || || | Sbjct 4198 AAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 4139 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || |||| ||| || Sbjct 4138 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 4079 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 4078 ACAAAGATCTGCATG 4064 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||||| |||||| || || || |||| Sbjct 4030 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCG 3971 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| ||||| || || || ||||| || || || || | Sbjct 3970 AAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 3911 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || |||| ||| || Sbjct 3910 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 3851 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3850 ACGAAGATCTGCAT 3837 >seq122 Length=66504 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 11082 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 11023 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || || ||||| ||||| |||||| || || | |||| Sbjct 11022 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTG- 10964 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 10963 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10904 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 10903 AAGATCTGCATG 10892 >seq168 Length=56023 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| |||| ||| || ||||| || || || || | Sbjct 52146 GACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 52087 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 52086 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 52027 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| || | || | ||| ||||| |||| || || Sbjct 52026 TTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTG 51967 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 51966 ACGAAGATCTGCATG 51952 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||| || ||||| || || || || | Sbjct 51918 GACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 51859 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 51858 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 51799 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| |||| || | ||| || ||||| || || || Sbjct 51798 TTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTG 51739 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 51738 ACGAAGATCTGCAT 51725 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| ||| || ||||| || || || || | Sbjct 52374 GACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 52315 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 52314 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 52255 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || |||||| || | || | ||| ||||| |||| || || Sbjct 52254 TTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTG 52195 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 52194 ACGAAGATCTGCATG 52180 >seq55 Length=127487 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTG 52712 || || || ||| || | ||||||||| | | ||||||| ||||||| ||||| ||| Sbjct 35647 CTCCCTGTGGAGTTGATCGGCATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTG 35588 Query 52713 GCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTT 52771 || ||||| ||| || || || || | | ||| | ||||| ||||| || Sbjct 35587 GCAGATCGCCTGCTTTACTCA-CTGGGTGTGTCCAAGATTTACAACGTGAAGAATCCATT 35529 Query 52772 TGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGG 52831 || | ||| ||| || ||||| |||||||||| |||||||||||||| || ||||| Sbjct 35528 CGACTGGATGGACATGATCTCGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGG 35469 Query 52832 CGAGTA 52837 ||||| Sbjct 35468 TGAGTA 35463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245266540640