Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1294 154 1e-32 seq168 131 2e-25 seq439 123 2e-23 seq12 111 1e-19 seq55 95.1 1e-14 seq122 93.3 4e-14 >seq1294 Length=4314 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||||| ||||| || | |||||||| || || || ||||| |||| | Sbjct 4291 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4232 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||||||||||||||| || ||||| Sbjct 4231 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 4172 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| || Sbjct 4171 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATAGAGTCCGACGGCTCCAC 4113 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || || |||| ||| || ||||| ||||||||| Sbjct 4112 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 4064 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||||| ||||| || | |||||||| || || || ||||| |||| | Sbjct 4063 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4004 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||||||||||||||| || ||||| Sbjct 4003 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 3944 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| || Sbjct 3943 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATAGAGTCCGACGGCTCCAC 3885 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || |||| ||| || || || |||||||| Sbjct 3884 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 3837 >seq168 Length=56023 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||| ||||| || || || ||||| || | || ||||| ||| || Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||||| |||||||| || ||||| ||||||||||||||| Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||||||| |||| |||| || |||| ||| || |||| ||| | ||| | Sbjct 51814 AATCTTTTGCTTGACGTTG-TCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCT 51756 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || || || || |||||||| Sbjct 51755 TGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||| ||||| || ||||| ||||| || | || ||||| ||| || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||||| |||||||| || ||||| ||||||||||||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||||||| |||| |||| || |||| ||| || || | ||| | ||| | Sbjct 52042 AATCTTTTGCTTGACGTTG-TCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || |||| || || || || ||||||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| ||||| || || || ||||| || | | Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| |||||| |||||||| || ||||| Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||||| |||| |||| || |||| ||| || Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTG-TCGATGGAATCCGACGGCTCCAC 52229 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || |||| || || || || ||||||||| Sbjct 52228 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 52180 >seq439 Length=25118 Score = 123 bits (136), Expect = 2e-23 Identities = 296/442 (67%), Gaps = 8/442 (2%) Strand=Plus/Plus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||| ||||||||| |||| ||| | ||| ||||| ||| || Sbjct 17473 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATG---GA 17529 Query 145818 CATGACCGAG-TA--CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | || ||| || ||||||| | || || || || ||||| ||| Sbjct 17530 CGTGAGCTTGCTAATCGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 17589 Query 145875 GAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGG 145933 | | || ||| |||||||| | || ||| | || ||| || || ||||| | | Sbjct 17590 GTA-GGCGCCACGGTCGGCAGACAGGTCCAGCACAGCCTTCTGCTTGATCTCCCACACCG 17648 Query 145934 TTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTT 145993 | || | ||||||||||| | || ||| | | | ||||||||| || || | Sbjct 17649 TCTTGTACTTCTCCTTGACGTGGTCCGGGATTACCTTCACGTTCTGCACGGAGCCGCCGT 17708 Query 145994 CGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGA 146053 || || || | |||||||| || || || | || || || | || | || | Sbjct 17709 CGTTCAGGATCTGGTTGCGCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCA 17768 Query 146054 TGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGC 146113 | || |||| ||| || | | |||||||| || || || || | |||| |||| Sbjct 17769 TCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGG 17828 Query 146114 TGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCA 146173 ||| ||||||||| ||||||||||| || || ||||| || || | ||| || |||| Sbjct 17829 ACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCA 17888 Query 146174 TGTACGCCACCAGCAAAGAGTT 146195 || |||||||||| ||||| Sbjct 17889 TGGGAGCCACCAGCAGCGAGTT 17910 >seq12 Length=196586 Score = 111 bits (122), Expect = 1e-19 Identities = 129/169 (76%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| ||||| || ||||||||||| || Sbjct 58186 GGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTGCT-GTA 58128 Query 47472 CAG-CTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | || || ||| ||||| |||||| || |||| || ||||| | ||| ||| | Sbjct 58127 CTCTCTGGGCGTGTCC-AAGATCTACCACGCCAAGAACCCGTTCGACTGGATGGACATGA 58069 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||||||||| ||||||||||| || ||||| || Sbjct 58068 TCTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 58020 >seq55 Length=127487 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| || ||| |||||||| ||||| | ||| |||| || | || | || Sbjct 35687 CGACGCTGTCACCATTGAGCACGAGTTCGTGTGCGACTCTCTCCCTGTGGAGTTGATCGG 35628 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT-TC 47472 |||||| | | | | ||| | ||||||| || || || || || |||||||| || Sbjct 35627 CATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGCCTGCTTTACTC 35568 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 | || ||| ||||||||| || ||||||||||||| | ||| ||| || | Sbjct 35567 ACTGGGTGTGTCC-AAGATTTACAACGTGAAGAATCCATTCGACTGGATGGACATGATCT 35509 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||| |||||||||||||| || ||||| || || Sbjct 35508 CGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTA 35463 >seq122 Length=66504 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 11080 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 11021 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || || ||||||||| |||||||||||||| | || Sbjct 11020 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10961 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 10960 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 10901 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 10900 ATCTGCATG 10892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484383334880