Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq439 273 3e-68 seq55 150 2e-31 seq12 120 4e-22 >seq439 Length=25118 Score = 273 bits (302), Expect = 3e-68 Identities = 963/1479 (65%), Gaps = 40/1479 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| |||| ||| || || || || Sbjct 17819 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAA 17878 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || |||||| ||||| | | | | ||| Sbjct 17879 GCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTTCTCC 17938 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTG--AGCTTT-GTCTCCCCCTCCCACATATCAAACTGG 116079 ||||||| ||||||| | | || | | | | ||||||| || |||||| Sbjct 17939 TTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACGCCCCACATGTCGAACTGG 17998 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC--CTCCG 116137 | || ||| | | |||||||| |||| || |||||||| |||||| |||| || || Sbjct 17999 AAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATA-GGGCCC-CAACTCCTTCG 18056 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | || || ||| | || ||| || || ||||| || ||| || | Sbjct 18057 CAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGA 18116 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGA 116256 | | |||||| | | || |||| || | || || ||| || | || || ||| Sbjct 18117 GTTCGCTGGCCTGCTGGCTCTCGAACG-GATAGTTCATCAGAATGAACGCGTCAGCCAGA 18175 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || || ||||||| || | ||||| || | ||| || ||||| ||||| | ||||| Sbjct 18176 CCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACCACG 18235 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || ||||| ||| | || ||||| || || ||||| | || Sbjct 18236 GGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACCACCTCG 18295 Query 116377 TGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | ||||| | ||| | |||||| | ||| || || |||| || || |||| Sbjct 18296 TACAGCTTCTGGTAGCTGAAAACTCC----CTCCTCCACGA---ACTTGGGGAGCGCGAC 18348 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||| ||| ||||||| ||||| | |||||||| || | || || Sbjct 18349 AGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTCACAGCA 18408 Query 116496 CAAATTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 ||| || |||| || || |||| ||||| || || || || |||| || Sbjct 18409 CAAGTTACTGGAACGG---ATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTAGCTGC 18465 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||||||||| | ||| ||||| || | |||| | || || || ||| Sbjct 18466 GTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAACCA 18525 Query 116613 TACATCGGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 || | || | ||| | ||| ||| || ||||| |||| ||||||||| || Sbjct 18526 --CAGCTGCTG--GGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTCTCGTACTTCTCGT 18581 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||||| |||||||||||||||| |||| ||| |||| || || || | || |||||| Sbjct 18582 AGAGGGTCTCAAACTCTTCACCC-CAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAG 18640 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 || | | ||| | ||| |||| |||| ||||||||||| || || | ||| | Sbjct 18641 AACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAAT 18700 Query 116788 GCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 || |||| | || ||| || | | || | | || ||||| || | |||| Sbjct 18701 GCGTAGAACAAGTCACGAGCACGGTGGAGCT-CGTTACCGTGATTCTTGCGGAGATCCAG 18759 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA-- 116904 || || | | ||| ||||||||||| |||||||| | |||| || |||||||| Sbjct 18760 GAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTT 18819 Query 116905 -CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 | || |||||| || || | || || | || || || | | ||| || || || Sbjct 18820 GCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAAT 18879 Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 |||| || ||||| || || || || || | || | || || ||| || Sbjct 18880 TCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTCGTCGCACGGATATTGTGCAT 18939 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || |||||||| || |||||||| ||||| || |||| | | | || |||| Sbjct 18940 ACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTA 18999 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || |||||||||||| ||| | || | |||||||| |||| ||| || | Sbjct 19000 GATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCG 19059 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 |||||||||||| ||||| || || || || ||||| |||| | || | || |||||| Sbjct 19060 TGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA-AAACTTCTGCGACATCA 19118 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 ||||| ||||||| | | ||||| | ||| ||||||| | || |||| Sbjct 19119 GCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCACGCGCA 19178 Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322 ||| ||| | ||| || ||||| || | |||| || | |||||| | ||| Sbjct 19179 TAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGACACGGAAGAGGTATCCTCTCT 19238 Query 117323 CCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCC 117361 |||||||||||| || || ||| | | || |||||| Sbjct 19239 CCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCC 19277 >seq55 Length=127487 Score = 150 bits (166), Expect = 2e-31 Identities = 368/543 (68%), Gaps = 21/543 (4%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || |||||||| |||||||| ||||||||||| || | ||| | Sbjct 35451 CCAGCCTTGGAGTACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAG 35510 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTG 127338 || | ||||| | || ||||| ||||| ||| |||| | | ||| |||| | | Sbjct 35511 ATCATGTCCATCCAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAG 35570 Query 127339 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 127398 | || || ||||| | ||| |||||||||||| |||| | | |||||||| || Sbjct 35571 TAA-AGCAGGCGATCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCC 35629 Query 127399 GATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 127457 ||| | | ||| ||||| | ||| | | |||| | | ||||||| ||||| || | Sbjct 35630 GATCAACTCCACA-GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTCGC 35688 Query 127458 GTACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAG 127510 | | ||| |||| | | | || ||| | | || || | ||| | ||| | Sbjct 35689 GGATGATTTCGTGTACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG 35747 Query 127511 AGTTCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAG 127570 || || || || ||| | |||||||| ||| ||| | || ||||||||| Sbjct 35748 -----CAG-GCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAG 35801 Query 127571 CACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAG 127630 | ||||| |||||||| || |||||||| | |||||| |||| || || || || ||| Sbjct 35802 CTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAG 35861 Query 127631 AAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCT-CGGCAAAGGAGCGGGACTT 127689 |||||||| |||||||| |||||||| | || |||| ||| ||| || || Sbjct 35862 AAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC-G 35920 Query 127690 TGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT 127749 | |||| ||||| | | ||||| | ||||| || | | ||| |||| |||| ||| Sbjct 35921 AGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGAT 35980 Query 127750 CGC 127752 || Sbjct 35981 GGC 35983 >seq12 Length=196586 Score = 120 bits (132), Expect = 4e-22 Identities = 389/591 (66%), Gaps = 15/591 (3%) Strand=Plus/Plus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 58008 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGCGAG 58067 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | || || |||||||| | || | || | | ||| || | Sbjct 58068 ATCATGTCCATCCAGTCGAACGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGAGAG 58127 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || || || || | || |||| ||||||| |||| | | |||||||| || Sbjct 58128 TACAGCAGGCGGTCAGCCACAAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCA 58187 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | || |||| ||| | ||| | | ||| || ||||||| | || Sbjct 58188 ATCAGCTCCACCGGAAGCGAATCCCGCACAAACTCGTGCTCGATCACCACAGCGTTGCGA 58247 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTG-CGTAAAGTCTTGAAGA---GTT 127514 ||||| | || || | | || ||| | | ||| || || | ||| | | Sbjct 58248 ACGATCTCATGGATGCGGCTCTCCGGCAGCT-TGTTGACG---AGCTTGGAATACAGGAG 58303 Query 127515 CCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACA 127574 ||| || || || ||| | |||||||||||| ||||| || |||||||||| || Sbjct 58304 GCAC-GCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCA 58362 Query 127575 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634 |||| |||||||| || |||||||| | |||||| || | || || || || || |||| Sbjct 58363 GACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGA 58422 Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTA 127693 | || |||||||| ||||| |||| |||||||| || |||| | || | Sbjct 58423 AAATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGA-TGACACACGCGGG 58481 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCT 127753 ||| ||||| | | ||||| | ||||| |||| | ||| || | ||||| ||| || Sbjct 58482 TCACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCA 58541 Query 127754 TCAAAGAGTTCCTTCTTTTCTGATGG-ATCTTTGATGTACTTATCTATGAG 127803 | || | | ||| || |||| || ||||||||| | || ||||| Sbjct 58542 CGCAGAAGGTGGTCCTTCTC-AATGGTGTCCTTGATGTACGTGTCGATGAG 58591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613486018663920