Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq439 181 2e-40 seq12 150 3e-31 seq55 96.9 6e-15 >seq439 Length=25118 Score = 181 bits (200), Expect = 2e-40 Identities = 416/617 (67%), Gaps = 11/617 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| || ||||| ||||||| | || | | | || ||||||||||| Sbjct 17431 CTTGTCCACAGTAAACTGGATGGCGTCAGCTTTCGGGCGCCCGCGCATGTAGTACATGCC 17490 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | || Sbjct 17491 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTGCTAATCGTCGG 17550 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 |||||| ||||| ||||| || ||||| || ||| ||| ||||||| || || || | Sbjct 17551 GTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCGCCACGGTCGGCAG 17609 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 || | | | | ||||||| |||||||||||||||||| || || || || Sbjct 17610 ACAGGTCCAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGT 17669 Query 204078 GTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CATCC 204134 | | || | | ||| ||||| ||| | |||||| |||| || | ||| | | Sbjct 17670 GGTCCGGGATTACCTT--CACGTTCTGCACGGAGCCGCCGTCGTTCAGGA-TCTGGTTGC 17726 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 | |||| | ||| || |||| ||||||||| || ||||| ||| | || Sbjct 17727 GCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGA 17786 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 || || || || | ||||| | ||| || ||| |||| ||| | || |||| | Sbjct 17787 TCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAG 17846 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| | |||||||| || ||||| ||||||||||||| ||||| | Sbjct 17847 ACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCG 17906 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA---TCG 204371 ||||||| | ||||| || || | ||| || | | |||||| || | Sbjct 17907 AGTTGCGAAGACCGTGCTTGATCACGTTCTCCTTGAGGGTAGCCCAGTCCCACAGGCCAG 17966 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | || |||||||||||||||||||||| |||| || | || |||| ||||| Sbjct 17967 AAGAAGGCGTCACGCCCCACATGTCGAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCT 18026 Query 204432 TGTACGTCGGATAAGGC 204448 | ||||| ||| ||| Sbjct 18027 GGAACGTCTCATAGGGC 18043 >seq12 Length=196586 Score = 150 bits (166), Expect = 3e-31 Identities = 540/838 (64%), Gaps = 26/838 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| ||||||||| |||||||||||||||| | || || ||||| | |||| Sbjct 58028 CACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAA 58087 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| |||| ||| ||| | | || |||| ||||| | ||| ||||| Sbjct 58088 CGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGAGAGTACAGCAGGCGGTCAGCCAC 58147 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||| |||||||| ||||| || | |||| || || | |||| || || |||| Sbjct 58148 AAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCCACCGGAAGCGA 58207 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 ||| || |||||| | ||| ||| | || || | | || |||| || || Sbjct 58208 ATCCCGCACAAACTCGTGCTCGATCACCACAGCGTTGCGAACGATCTCATGGATGCGGCT 58267 Query 159883 GTACCCCGGCTTGCCCAAAATGTGGTCCTT---AAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | | ||||| || | ||| | ||||||||||||| || ||| ||| Sbjct 58268 CTCCGGCAGCTTG------TTGACGAGCTTGGAATACAGGAGGCACGCGAAATCGGTGTG 58321 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || |||||||| || |||| |||||| || | | | || || ||||||| || || Sbjct 58322 CATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCG 58381 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCG 160058 | |||||||| || |||| ||| ||| | | | |||| || || |||||||| || | Sbjct 58382 CTTCTTGAGCCAGAAGATGG-AGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAG 58440 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGG-----CGTTGGTGTCATGGGTCCACCTTTT 160113 | || || || || | ||| | | || | || ||| || |||||| Sbjct 58441 CGAAAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACA-----CCACCTGAG 58495 Query 160114 GGCCCATTCAGCCTTCTT-TGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 |||||| | ||||||||| ||| | || || ||| ||||| || | | || Sbjct 58496 GGCCCAGTTAGCCTTCTTCTGC-ACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGT 58554 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 ||| ||| | |||||||| || | || ||| |||||| | || | ||| | Sbjct 58555 CCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAA 58614 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCT 160292 || || ||||| ||||| ||| |||||| | || || | ||||||||| | Sbjct 58615 TGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCAT 58674 Query 160293 GTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCA 160352 |||| | |||| || | || || | |||||| ||| || |||||||| | Sbjct 58675 TGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGA 58734 Query 160353 ACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGT 160412 |||||| ||||||||| | ||||| | |||| || |||||| ||| || Sbjct 58735 GCACGTGCTTGATGAAATGGCGCTCGTTATCCGTGAG---GTTGCCCCAGTCCTTCAGGT 58791 Query 160413 CTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470 | || | | ||||| ||| || || |||| || ||||| || | |||||||| Sbjct 58792 CGTGCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACAT 58849 >seq55 Length=127487 Score = 96.9 bits (106), Expect = 6e-15 Identities = 283/430 (66%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||||||||| |||||||||| | || || ||||| | ||||||| ||| Sbjct 35478 TTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAATGGATTC 35537 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 ||||||| || ||| | | || || | |||| | |||||||| || || Sbjct 35538 TTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCGATCTGCCACGAACTCA 35597 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 ||||| ||||| || | |||| || || | || | || ||||| | || || Sbjct 35598 ATGTACTGGCACATGAGCGCTGAGTTCATGCCGATCAACTCCACAGGGAGAGAGTCGCAC 35657 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACCC 159888 | ||||| | |||||| ||| || ||| | || | || | || || | | Sbjct 35658 ACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTT-CGTGTACGCGGCTCTCCGG 35716 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 | ||||| || | | | | ||| |||||| || || || ||||| |||||| Sbjct 35717 CAGCTTGTTCACGA---GCTTCGAGTACATGAGGCAGGCGAAATCCGTGTGCATTCCCTC 35773 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 |||||| ||| | |||||| || | | |||| || ||||||| || ||| ||||| Sbjct 35774 GTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAG 35833 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || || | ||| || | | | | || ||||| |||||||| || || ||||||| Sbjct 35834 CCAGAAGATCG-AGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCA 35892 Query 160068 CGAGCCTCTC 160077 |||| ||| Sbjct 35893 GCAGCCGCTC 35902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127747266720