Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12 233 2e-56 seq55 224 1e-53 seq168 132 5e-26 seq122 122 9e-23 seq1294 107 2e-18 seq228 100 3e-16 >seq12 Length=196586 Score = 233 bits (258), Expect = 2e-56 Identities = 416/602 (69%), Gaps = 4/602 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || || ||| |||| ||||||||| | | |||||| ||||| ||| ||| Sbjct 58304 GCACGCGAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAG 58363 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||||||||| || |||||||| || |||| | ||| ||||||||||| Sbjct 58364 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAA 58423 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | |||||| || || |||||||| ||||| ||||| || | | | | || || Sbjct 58424 AATGCCCTCCACCGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACAC-GCGGGT 58482 Query 133074 GAT-CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 | ||| | || ||||| | ||||| | | || || || || || ||||| || Sbjct 58483 CACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCAC 58542 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACA 133192 || | || ||||| | | | ||| ||||||||||| ||| || | Sbjct 58543 GCAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGA 58602 Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252 |||||||| | |||||| ||||| || || |||||||| ||||| || || || || Sbjct 58603 CCTCCGAGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCA 58662 Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 ||||||| || | ||| | | |||| || ||||| ||||| ||||||||||| | Sbjct 58663 CCTGCACCTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAG 58722 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 |||| || || ||||||||||||||||||||||||||||| || | | | |||||| Sbjct 58723 CGAAGAAAGCGAGCACGTGCTTGATGAAATGGCGCTCGTTATCCGTGAGGTTGCCCCAGT 58782 Query 133373 CGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 | | || | || || || || | |||||| | ||||| || || ||||| || || Sbjct 58783 CCTTCAGGT-CGTGCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTC 58841 Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 |||||||| ||||| || | || ||||| || | ||| || ||| ||||||| Sbjct 58842 TTGTACATCTGCCACACCTCATGCTCCTGGATGGGGAAGAGCACGAAGCGGTGGGGGTTC 58901 Query 133492 TC 133493 || Sbjct 58902 TC 58903 >seq55 Length=127487 Score = 224 bits (248), Expect = 1e-53 Identities = 466/688 (68%), Gaps = 22/688 (3%) Strand=Plus/Plus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTC-GGCCG-TT 132871 ||||| |||| ||| |||||| || |||||| ||||| || ||| ||| | || Sbjct 35667 TGCTCAATGGTGACAGCGTCGCGGATGATTTCGTGTACGCG----GCTCTCCGGCAGCTT 35722 Query 132872 G--CACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 | ||| | | | | |||| | ||| || || || |||| |||||||||| | Sbjct 35723 GTTCACGAGCTTCGAGTACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCT 35782 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 || | ||||| ||| | | || |||||||||||||| || |||||||| || || Sbjct 35783 GATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 35842 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | | ||| ||||| ||||||| |||||| || || ||||| |||| ||| ||||| Sbjct 35843 CGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTC 35902 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATC----CAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 | | | | | | |||| || | || ||||| | ||||| | || Sbjct 35903 CGGGTAAGAAGACACAC----GAGGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTT 35958 Query 133106 TGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCA 133165 || ||||| ||||| |||||||| || || | |||||| | | | | Sbjct 35959 GCACACACGGGATCGTCTCGATGGCACGCAGCAGATAATCTTTCTCGACTGTGTCCTTGA 36018 Query 133166 CGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225 ||| |||||||| || || || | ||||||||| | ||||| ||||| || || | Sbjct 36019 TGTACGTGTCGATCAGCAGGGAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGA 36078 Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGAT 133285 | ||||| ||||| || |||||| |||||| | || | ||| | | | || | Sbjct 36079 AACCGTAGAAGCAGCGGGCCTCGGGCACCTGGATCTCATTGCTGAAGTTCATGGCTAGGT 36138 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| |||| Sbjct 36139 TCTCGTTAACGATACCGTCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAAGTGGC 36198 Query 133346 GCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||| ||||| ||| ||| |||||||| | ||| | |||||| | |||| Sbjct 36199 GCTCATTGTCCGTCA---GCTTGGCCCAGTCGTTCAGGTCGTGTACCAGGTCGAGTTCCT 36255 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTA 133462 || | ||||| || || ||||||||||| |||||||| ||||| ||| | || | Sbjct 36256 CGGCAGTCCAGAAAGATGCCTCGGCTTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 36315 Query 133463 TGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||| || | ||| || ||| |||||| Sbjct 36316 TGGGGAAGAGCACGAAACGGTTGGGGTT 36343 >seq168 Length=56023 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| || || ||| ||||||| ||| | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | |||| | || |||| || | ||||| ||||| || || | || Sbjct 51782 TCGGATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 51840 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | ||||| || | ||||| Sbjct 51841 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTA 51900 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||| || || | |||||| Sbjct 51901 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 51952 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| ||| | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||| || | ||||| ||||| || || | ||||| Sbjct 52241 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52299 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52300 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52359 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||| || || | ||||| Sbjct 52360 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGG 52407 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| ||| | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||| || | ||||| ||||| || || | ||||| Sbjct 52013 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52071 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52072 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52131 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| |||||||||| ||||||| || || | |||||| Sbjct 52132 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 52180 >seq122 Length=66504 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 10893 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 10952 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| || ||||| |||||| ||||| Sbjct 10953 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAAT-CCCGCCTGACCA 11011 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 11012 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 11071 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 11072 CATCCAGAAGG 11082 >seq1294 Length=4314 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || | ||||| || || ||||| | ||||| ||| | Sbjct 3833 AACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCC 3892 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||| | | |||| | || | || || | ||||| ||||| ||||| | | Sbjct 3893 GTCGGACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTG 3951 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | || | ||| ||||| |||||||| |||| || || || | ||||| Sbjct 3952 ACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACT 4011 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || || |||||||||| || | || ||| Sbjct 4012 ACAACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4064 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | ||||| ||| | | Sbjct 4065 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 4124 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 4125 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 4183 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 4184 GCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAA 4243 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||||| || | || ||| Sbjct 4244 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4292 >seq228 Length=47695 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 37802 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 37743 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||| ||||| ||||||||||| || | Sbjct 37742 ACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 37683 Query 38466 GGCGG 38470 || || Sbjct 37682 GGTGG 37678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155531534080