Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq439 194 2e-44 seq55 122 1e-22 seq51 109 7e-19 seq12 109 7e-19 seq498 82.4 9e-11 >seq439 Length=25118 Score = 194 bits (214), Expect = 2e-44 Identities = 429/635 (68%), Gaps = 9/635 (1%) Strand=Plus/Minus Query 111621 ATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACA 111680 ||| | ||||| || || |||||||||| | || || | | | | ||||||| Sbjct 19185 ATGATTATGCGCGTGGCTCTCGGTATCCACAAGAGTGACATCAAGGCAGCTCTGGAGACG 19126 Query 111681 TACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGG 111739 ||||| |||||| | | || | |||| ||||| || || || || ||||| ||||| Sbjct 19125 TACGAGCTGATGTCGCAGAAGTTT-TTCACTCACGCTACCCCGACGCTGTTCAATGCTGG 19067 Query 111740 TACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAA 111799 ||||||| |||| ||| ||||| ||| ||||| | || | |||| || || ||| | Sbjct 19066 TACACCACGACCGCAATTGTCCTCTTGCTTCCTGTTGGCGATGCAGGATGACTCGATCGA 19007 Query 111800 TGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGG 111859 ||||| |||| ||| | | | |||||| ||||| ||||||||||| ||||| || Sbjct 19006 GGGCATCTACGACACCTTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGGAGGTATTGG 18947 Query 111860 GATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATC 111919 || || || || || | || | || || | || || |||||| || Sbjct 18946 CATTAGTATGCACAATATCCGTGCGACGAACAGCTACATCCGCGGCACGAATGGTTCCTC 18887 Query 111920 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGC 111979 |||| ||||| || ||| | | || || || | || || ||||| || |||| | Sbjct 18886 CAATGGAATTATCCCCATGTTGAGAGTCTTCAATGATACCGCTCGCTACGTGGACCAGGG 18827 Query 111980 TGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCAT 112036 || | |||||||| || |||| |||| || ||||| |||||||| ||| | | Sbjct 18826 AGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGCACGCCGATGTGTT 18767 Query 112037 GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCT 112095 |||||||| || | || || || ||| | ||| | | |||| || || | | Sbjct 18766 CGAGTTCCTGGATCTCCGCAAGAATCACGGTAACGAGCTC-CACCGTGCTCGTGACTTGT 18708 Query 112096 TCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGT 112155 ||| ||| | ||| | || |||||||||||||| || || |||| | |||||| ||| Sbjct 18707 TCTACGCATTGTGGGTGCCCGATCTCTTCATGAAAAGGGTGGAGGCCAATGGCAAGTGGA 18648 Query 112156 CTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAA 112214 | | || ||||| | | || || || |||| ||| ||| | |||||| |||||||| Sbjct 18647 GTTTGTTCTGTCCTAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGAAGAGTTTGAG 18589 Query 112215 GCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGC 112249 |||||||| ||||||||| | ||| | || || Sbjct 18588 ACCCTCTACGAGAAGTACGAGAAGGAAGGGCGTGC 18554 >seq55 Length=127487 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || | || ||| | |||||||| ||| | |||||| | | ||||| |||| Sbjct 35983 GCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGAT 35924 Query 102159 ACAAAGTCGCGTTCCTTTG----CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 102214 | ||| || ||| | ||||| || | || || || || ||||| || Sbjct 35923 CC----TCGTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCAT 35868 Query 102215 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 102274 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 35867 CTTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 35808 Query 102275 TCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||||| |||||| | ||| || ||||||||| | ||| Sbjct 35807 TCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCAC 35762 >seq51 Length=98038 Score = 109 bits (120), Expect = 7e-19 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC--GACTTCAAAGA 16122 || ||||||||||| ||||||| ||||| ||| | ||| ||| | |||| | |||| Sbjct 35204 GCGTCAATCTCATCGATGAAGATAATGCACGGT-GCTTTCCGCTTGGCTGACT-CGAAGA 35261 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || ||||| ||||| ||||| || |||||||| |||| | | |||| Sbjct 35262 GGTCACGCACACGACGTGCGCCAACACCGACGTACATCTCCTCAAACTCCGATCCGGACG 35321 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || |||||| ||| || ||| |||||||| || ||||| || || |||||||||| Sbjct 35322 AGTAGAAGAAGGGCACACCAGCTTCGCCCGCAATAGCACGGGCCAGCAGCGTCTTACCCG 35381 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 35382 TACCAGGC 35389 >seq12 Length=196586 Score = 109 bits (120), Expect = 7e-19 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| ||||||| | || || | || ||| | Sbjct 58591 CTCATCGACACGTACATCAAGGACACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAG 58532 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || |||| ||| | || ||||| || | ||||| | | ||||| ||| | || | Sbjct 58531 ACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGC-GT-G 58474 Query 102168 CGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 || |||| || ||||| || | || || || || ||||| || ||||| || | Sbjct 58473 TGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTCGG 58414 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||||||| | || | |||||||||||||| || |||||||| ||||| |||||| Sbjct 58413 GATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCT 58354 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGG 102313 | |||||||| || ||||||||||| Sbjct 58353 CGAACGAGCTCATTAGCCGTGACGAGGG 58326 >seq498 Length=21154 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 |||||||||| || ||||| || || || |||||||| || ||||||| | | | Sbjct 3337 CCACGGCATCGATTTCATCGATAAACACAATGCATGGAGCGTTCGCGCGAGCCTCCTTGA 3278 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | || || ||||| | |||||||| ||||||||||| | || | | ||| Sbjct 3277 ACAAGTCACGCACACGAGACGGACCCACACCGACAAACATCTCGATGAAATCCGAACCGG 3218 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 || || ||| || || | | ||||| ||| |||| ||| || || || |||| Sbjct 3217 AAATGCTGAAGAACGGCACGCTCGCCTCACCAGCAGTGGCCTTGGCCAGCAGCGTTTTAC 3158 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||| ||| || | || || ||||| || |||||||||||| Sbjct 3157 CCGTACCGGGCGGGCCAACAAGCAGAGCACCCTTGGGGATCTTGGCGCCA 3108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620720968868640