Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq439 217 2e-51 seq55 105 8e-18 seq51 100 3e-16 seq152 87.8 2e-12 seq142 84.2 3e-11 >seq439 Length=25118 Score = 217 bits (240), Expect = 2e-51 Identities = 634/960 (66%), Gaps = 31/960 (3%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || ||||||||||| |||||| ||||| | ||||||| Sbjct 18333 ACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACT 18392 Query 106512 CTAAAATTTCTGTACACAAGTT---GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | || |||||||| ||||| ||||| |||| |||| ||||| Sbjct 18393 CCATCACCTCACAGCACAAGTTACTGGAACGG---ATCGTACCCAGGTTCTGCTGGTTGG 18449 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 || ||| || ||||||||||||||| | ||| ||||| || |||| | | Sbjct 18450 ATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGT 18509 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGCTGGTACA--ATGGCGTTG---GCCCGTCCCTC 106683 || || || ||||| || ||||| |||| ||| || || || || Sbjct 18510 CAAGGATCGCGAACCACA-----GCTGCTGGGCGTTGATGGTCTTGCGAGCACGCCCTTC 18564 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTG 106742 | ||||||||| |||||||| |||||||| |||||| | || ||| |||| || | Sbjct 18565 CTTCTCGTACTTCTCGTAGAGGGTCTCAAACTCTTCACCC-CAGCACTCGTAGAGTCCAG 18623 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || | | |||||||| | | ||| | ||| |||| |||| |||||||| | Sbjct 18624 GAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGA 18683 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 106861 | || || | ||||| | | || | || | | ||| | | || ||| ||| || Sbjct 18684 GATCGGGCACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCT-CGTTACCGTGA 18742 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | || |||||||| | | ||| |||||||| ||||| || |||| ||| Sbjct 18743 TTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCG 18802 Query 106922 ATAGATCCCTTTCGACGCCCAGCT---TGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 | || ||||| || || || || | || ||||| || || | || || || Sbjct 18803 AAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACT 18862 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATT 107037 | | ||| || ||||| |||| || |||||| || || || || || | || | Sbjct 18863 CTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGT-AGCTGTTCGT 18921 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | || || || || |||||||| ||||||||||| ||||| ||||| Sbjct 18922 CGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACA 18981 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 || | | | || | ||||| || | ||| ||||| |||| | || | |||||||| Sbjct 18982 CTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCA 19041 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 | ||||| ||||||| |||||||||||||||||| || || || || |||||| |||| Sbjct 19042 AGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA 19101 Query 107218 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 | || | || |||||| ||||| ||||||| | | | ||||| | ||||| Sbjct 19102 -AAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGA 19160 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCC 107336 | |||| ||||| ||||||| ||| | ||| || ||||| | |||||| || | Sbjct 19161 TACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGACAC 19220 Query 107337 GTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||| || | |||| | ||| |||| || ||||| | | || ||||||| Sbjct 19221 G--GAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCCG 19278 >seq55 Length=127487 Score = 105 bits (116), Expect = 8e-18 Identities = 348/536 (65%), Gaps = 30/536 (6%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || || ||||| || ||||| ||||| || | || || | ||||| Sbjct 35463 TACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATC 35522 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||| |||||||||||| |||| |||| | ||| || | | | || || ||| Sbjct 35523 CAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCGA 35582 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||||||||||| | |||| | | |||||||| ||||| | | ||| Sbjct 35583 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCCGATCAACTCCACA 35642 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | | |||| | | |||||| || || || | | Sbjct 35643 -GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTC------------GCG 35689 Query 117225 GATAGTTTCG-GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCC----AC------- 117272 ||| ||||| ||| || || | ||| | || | ||||| | || Sbjct 35690 GATGATTTCGTGTACGCGG-CTCTCCGGCAGCTTGTTCACGAGCTTCGAGTACATGAGGC 35748 Query 117273 -GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || ||| ||| | ||||| || ||| || | || || ||||||| || | Sbjct 35749 AGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGAC 35808 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| || || |||||||||| Sbjct 35809 CAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAGAAGAAGA 35868 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCT-CGGCGAAGGAGCGAGACTTTGTGTCA 117450 | |||||||| || ||||| | || |||| ||| ||| || | || | ||| Sbjct 35869 TGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC-GAGGATCA 35927 Query 117451 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| | | ||||| ||||||||||| | | ||| || | || | |||||| Sbjct 35928 CACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGATGGC 35983 >seq51 Length=98038 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG-GGCGATTTCAAAGAG 9430 || ||||||||||| ||||||| ||| || ||| | ||| ||| ||| || ||||| Sbjct 35204 GCGTCAATCTCATCGATGAAGATAATGCACGGT-GCTTTCCGCTTGGCTGACTCGAAGAG 35262 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || || || | ||||| ||||| || |||||||| |||| | | |||| | Sbjct 35263 GTCACGCACACGACGTGCGCCAACACCGACGTACATCTCCTCAAACTCCGATCCGGACGA 35322 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | || |||||| ||| || ||| |||||||| || ||||| || || ||||||||||| Sbjct 35323 GTAGAAGAAGGGCACACCAGCTTCGCCCGCAATAGCACGGGCCAGCAGCGTCTTACCCGT 35382 Query 9551 ACCTGGC 9557 ||| ||| Sbjct 35383 ACCAGGC 35389 >seq152 Length=71250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 60411 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 60352 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 60351 CCGGTAGGAGCTT 60339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 61248 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 61189 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 61188 CCGGTAGGAGCTT 61176 >seq142 Length=62677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| || || || || ||||||||||||| ||| | |||||||||| ||| || | || Sbjct 18715 CTTTCCTCGTAGTGGGAAGACGCCATAGTAATCTCTGCCAACGACGGCGAGGCCGCCCAC 18656 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGAT-TGCG 169479 |||| || || || || || |||||||| | || ||||| || | | | | | || Sbjct 18655 GGCAACCGTCTTGGCGGAGTCTCCCTCCGTAAGGATCAGGGTGCA-GTCCTTGCTCTTCG 18597 Query 169480 CCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGT 169522 | ||||| || | ||| ||||| |||| ||||| ||||| || Sbjct 18596 CTGTACCAGCATGGTTGGCGTCATCCAGTTTGGGGATACCGGT 18554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589960430912880