Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1294 98.7 6e-16 seq168 98.7 6e-16 seq122 96.9 2e-15 >seq1294 Length=4314 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| || | || | || ||| Sbjct 4273 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCC 4214 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | ||| |||||||| | || | ||||||||||| | Sbjct 4213 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 4154 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || || || | ||| || || | || || || || Sbjct 4153 ATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTC 4094 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||||||||||||||||||||| Sbjct 4093 CCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| || | || | || ||| Sbjct 4045 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCC 3986 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | ||| |||||||| | || | ||||||||||| | Sbjct 3985 AGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 3926 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || || || | ||| || || | || || || || Sbjct 3925 ATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTC 3866 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||||||||| ||||||||||| Sbjct 3865 CCCGTCAAAGTCTTCACGAAGATCTGCAT 3837 >seq168 Length=56023 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| |||||||| || || || || Sbjct 51915 TCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 51856 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || |||||| Sbjct 51855 ATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTG 51796 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| || |||| ||| || || || || ||||| ||||| || Sbjct 51795 TCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACG 51736 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 51735 AAGATCTGCATCTT 51722 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | || |||| |||||||| || || || || Sbjct 52143 TCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 52084 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || |||||| Sbjct 52083 ATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTG 52024 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| || || | ||| || || || ||||| | ||||| || Sbjct 52023 TCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACG 51964 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 51963 AAGATCTGCAT 51953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| |||||||| || || || || Sbjct 52371 TCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAG 52312 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || |||||| Sbjct 52311 ATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTG 52252 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| || || | ||| || || || ||||| | ||||| || Sbjct 52251 TCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACG 52192 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 52191 AAGATCTGCAT 52181 >seq122 Length=66504 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 11080 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 11021 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| ||||| Sbjct 11020 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 10961 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| |||| || || || | || ||||| || ||||| || ||||||| Sbjct 10960 ATGCTGTCGGA----CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 10906 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 10905 CAAAGATCTGCATGATTC 10888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622672224336