Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1848 147 2e-30 >seq1848 Length=2031 Score = 147 bits (162), Expect = 2e-30 Identities = 394/592 (67%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862 ||||| || ||||| | ||| || || || || || || | | ||||||||||| || Sbjct 340 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 399 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29920 || | ||||| | || || |||| || || |||| || || | ||| |||||||||| Sbjct 400 GGCTTCAGCCCAGCCACTTGTGCCACCA-GT-CGTGTAAGCAGTGCGTAACTGGCGATGT 457 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC 29980 | || || || || || |||||||| |||| | ||||| | ||| || || | ||| | Sbjct 458 TGAATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCC 517 Query 29981 CGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGT 30040 | || |||||| ||||| || | ||||||| ||||| | ||||| | | | Sbjct 518 CATCAGCCACGTAGAACTGGCAGAACATGTGGCAGGGAGGCAACGCCATCTCGTTAAGAT 577 Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTCCTGATGAGG 30099 | |||||||| || ||| | || | | ||| ||| || || | || | Sbjct 578 CAGCAGGGTTCCACGCCGACAACACAATTCTGCGGTCAGTTGGATTCGTACGCAATTTTG 637 Query 30100 T--CCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30156 | ||| || || ||||| ||||| || || ||||| || || ||| ||| Sbjct 638 TGATCAC----TTCAGCAAGCTGGTCCACACCTTGACCAGAGTAATCAGCGTGCATATCC 693 Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 ||||||| || || || || | ||||||||| ||||| ||||| || ||||| || || Sbjct 694 GTGTACTTGGCACCAAAGTGACGCCACTGGAAACCGTAGACCGGCCCGAGGTCCCCAACT 753 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || | | || | || | |||| | | | |||| || |||||| |||||||||| Sbjct 754 TCTCGATCCTGTAGTCCTCGACTGTCGAGATACTCTCGAGATCCGTTGCCGTCCCAGATG 813 Query 30277 TTTACCCCCTTCTCGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 30335 | | |||||| ||| | | || | | ||| || || | ||||||||||| Sbjct 814 TGAATTTCCTTCTGCTGCAGCGTGTGTGCA-CTAGTGTCGCCACTAATAAACCACAGCAG 872 Query 30336 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30387 |||||| | || | ||| || || ||||||||||| || | |||||| Sbjct 873 CTCCTCAGCTACACCACGCCAGAAAACTCTCTTGGTCGTCAGCAACGGAAAC 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603845165426