Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq439 297 4e-75 seq55 214 3e-50 seq12 212 1e-49 >seq439 Length=25118 Score = 297 bits (328), Expect = 4e-75 Identities = 928/1409 (66%), Gaps = 75/1409 (5%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 17480 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTT- 17538 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| ||| || |||| ||| ||||| | ||| || |||||||||| Sbjct 17539 ----GCT-AATCGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 17582 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | | ||| || | || ||| | | | | |||| || ||||| Sbjct 17583 GGCAAATGTAGGCGCCACGGTCGGCAGACAGGTCCAGCACAGCCTTCTGCTTGATCTCCC 17642 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | | ||||||||| || | Sbjct 17643 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATTACCTTCACGTTCTGCACGGAGC 17702 Query 212833 CCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCA 212889 | | || | |||| ||| ||||| ||| |||||| ||| | || Sbjct 17703 CGCCGTC---GTTCAGGATCTGGTTGCGCACCTCCGGCGTCCAGATACCCA-GATCGATC 17758 Query 212890 GGCAC-TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGG 212948 || | || | ||||| ||| || ||| ||| || |||| ||||| | | | | Sbjct 17759 AGCTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACGGTTG 17818 Query 212949 TAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG 213008 || | ||| || ||||| |||||||| ||||||||| ||||| ||||| ||||| Sbjct 17819 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAA 17878 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--C 213066 || || ||||||||||||||||| || ||| | | ||||||| ||| | | | Sbjct 17879 GCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCT---TGATCACGTTC 17935 Query 213067 GCC--GAAGCTCTGCCCAGTCCCATCTGCCAGA--CAGGTCCTCGTCCTTCACGTTCCAC 213122 || || | | ||||||||||| |||||| ||| | ||||| |||| Sbjct 17936 TCCTTGAGGGT-AGCCCAGTCCCACAGGCCAGAAGAAGG--------CGTCACGCCCCAC 17986 Query 213123 ATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCA 213182 ||||| ||||| |||| || ||||| | || ||||||| | | ||||| || Sbjct 17987 ATGTCGAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATAGGGCCCC 18046 Query 213183 TGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATC 213242 |||||| || | ||| |||| || || || | ||||||||||||| || || || Sbjct 18047 AACTCCTTCGCAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATG 18106 Query 213243 TCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACA 213302 | | ||||||| | |||||| || | ||| || |||| | |||| | Sbjct 18107 TTCTTGTTGAGTTCGCTGGCCTGCTGGCTCTCGAACGGATAGTTCATCAGAATGAACGCG 18166 Query 213303 TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCA 213361 |||||||| ||||| || ||||| |||| ||| | ||| | || ||| |||||| |||| Sbjct 18167 TCAGCCAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGC- 18225 Query 213362 CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTT 213421 |||| ||| |||||| ||||| |||||||| |||||| || || || || |||| || Sbjct 18226 CTCCACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTT 18285 Query 213422 GGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGG 213481 | || | | ||| | || || |||| | | || |||| ||| |||| || Sbjct 18286 GACCACCTCGTACAGCTTCTGGTAGCTGAAAA------CTCCCTCCTCCACGAACTTGGG 18339 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGA 213540 || |||| ||||| ||||| || ||||| || | | ||| | ||||||||||| | Sbjct 18340 GAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGAC-GTGTACTCCATCA 18398 Query 213541 TCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGC-G 213599 ||| ||||| ||| ||| | ||||| || ||||||||||| ||||| || ||||| | Sbjct 18399 CCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCTGCTGGTTGGA-TTTGCGG 18457 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 || || | ||||||||||||||| | || || || || | ||||| | || ||| Sbjct 18458 TTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATC 18517 Query 213660 TGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGT 213717 | ||| || | | ||| ||| | | || ||| | | | | | ||||| Sbjct 18518 GCGAACCACAGCTGCTGGGCGTTG---ATGGTCTTGCGAGCAC--GCCCTTCCTTCTCGT 18572 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGAT 213776 ||| |||||||| | || || | |||||| | || ||||| ||| | || Sbjct 18573 ACTTCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCAT 18632 Query 213777 GCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 ||||| | | ||||| | || | | || || | |||||| || || || Sbjct 18633 -TAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGC 18691 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTG 213893 ||||||| ||| ||||| ||| | | | ||||| || | || || ||| Sbjct 18692 ACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCTCGT-TAC-CGTGA-TTCTTG 18748 Query 213894 CGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 || ||||| || || || || | || |||||||||||||||| ||||||||| |||| | Sbjct 18749 CGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAG 18808 Query 213954 CCCGGCCTCTTG---CCGCCCTGGTCCAC 213979 ||| | |||| || ||||||||||| Sbjct 18809 CCCTTGCGCTTGCCTCCTCCCTGGTCCAC 18837 >seq55 Length=127487 Score = 214 bits (236), Expect = 3e-50 Identities = 555/838 (66%), Gaps = 11/838 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| || ||||||||||| |||| | |||||| | ||||| Sbjct 35462 GTACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCAT 35521 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| || || ||| || | | | || |||| | |||||| | Sbjct 35522 CCAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCG 35581 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGG-TGATGTTCATGCCTATGAGGGACA 48020 ||| || ||| |||| ||||| | ||||||| | ||| ||||||||| || | || Sbjct 35582 ATCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGA-GTTCATGCCGATCAACTCCA 35640 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCT 48080 | || | || | | ||||| | ||| || || || || | | || | | Sbjct 35641 CAGGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTTCGT 35700 Query 48081 TAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGT 48140 |||||| ||| | | ||||| || | |||| | || | | |||||| || | Sbjct 35701 GTACGCGGCTCTCCGGCAGCTTGTT---CACGAGCTTCGAGTACATGAGGCAGGCGAAAT 35757 Query 48141 CCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGA 48200 || |||||| || |||||||||||||| | | |||| ||||||| |||||||||||||| Sbjct 35758 CCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGA 35817 Query 48201 CCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| || | ||| || || ||||||||||||||||||| Sbjct 35818 GGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCA 35877 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAA 48319 |||| |||||||| |||| ||| | |||||| | | | | | | ||| Sbjct 35878 CTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACACGAGGATCACA-CCACCTG 35936 Query 48320 AGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG--GAAGAGCT 48377 || ||||||| |||||||| | | || || |||||||| ||||| || | ||| Sbjct 35937 AGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGATGGCACGCAGCAGATAA 35996 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 |||| ||| ||| |||| | || || || |||| | ||| | || |||| Sbjct 35997 TCTT--TCTCGACTGTGTCCTTGATGTACGTGTCGATCAGCAGGGAGTAAACTTCCGAGT 36054 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | |||||| || || |||||||| ||||||||| | |||||| |||||| | | Sbjct 36055 GGATATTCTCAATGGCTATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGCACCTGGATCT 36114 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || || ||||| || || || || || || || || |||| Sbjct 36115 CATTGCTGAAGTTCATGGCTAGGTTCTCGTTAACGATACCGTCACTTGCTGCGAAAAAGG 36174 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| |||||||| |||| || || |||| | | | || Sbjct 36175 CGAGCACGTGCTTGATGAAGTGGCGCTCATTGTCCGTCAGCTTGGCCCAGTCGTTCAGGT 36234 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | | ||||||| | ||| || |||||||||| || || ||||| |||||||| Sbjct 36235 CGTGTACCAGGTCGAGTTCCTCGGCAGTCCAGAAAGATGCCTCGGCTTTCTTGTACAT 36292 >seq12 Length=196586 Score = 212 bits (234), Expect = 1e-49 Identities = 556/841 (66%), Gaps = 17/841 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 58019 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCAT 58078 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | || ||||| | ||||||| | Sbjct 58079 CCAGTCGAACGGGTTCTTGGCGTGGTAGATCTTGGACACGCCCAGAGAGTACAGCAGGCG 58138 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || || |||||||||| | ||||||| | ||||||||| || || ||| Sbjct 58139 GTCAGCCACAAACTCGATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCCAC 58198 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | |||||| | ||| ||| ||| || | | || |||| | Sbjct 58199 CGGAAGCGAATCCCGCACAAACTCGTGCTCGATCACCACAGCGTTGCGAACGATCTCATG 58258 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | |||| ||| | | |||||| | | |||||| ||| || | ||| || || || Sbjct 58259 GATGCGGCTCTCCGGCAGCTTGTTG---ACGAGCTTGGAATACAGGAGGCACGCGAAATC 58315 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||| ||||| ||||| |||||| |||| ||||||| ||||||||||||| Sbjct 58316 GGTGTGCATGCCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 58375 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| || || || ||||| ||||||||||| Sbjct 58376 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCAC 58435 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || ||||| || || | ||| || | || | | | | | | | ||| | Sbjct 58436 CGCAGCGAAAGCAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACA-CCACCTGA 58494 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG--GAA-GAGCT 48377 | ||||||| |||||||||| | || || || ||||| || || || ||| | | | Sbjct 58495 GGGCCCAGTTAGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGT 58554 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 ||| |||| | |||| | || || |||||||| | ||| | ||| | Sbjct 58555 CCTT---CTCAATGGTGTCCTTGATGTACGTGTCGATGAGCAGC---GAGTAGACCTCCG 58608 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| ||||||||| | || ||| |||||||| Sbjct 58609 AGTGAATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCA 58668 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || || ||| || ||| ||||| || || || || || ||||| |||| Sbjct 58669 CCTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGA 58728 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | || || || || || | ||||||||||||||| | ||||| |||| ||| | Sbjct 58729 AAGCGAGCACGTGCTTGATGAAATGGCGCTCGTTATCCGTGAGGTTGCCCCAGTCCTTCA 58788 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | | || || | || || | ||||||||||| || || || ||||||| Sbjct 58789 GGTCGTGCACGAGATCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACA 58848 Query 48675 T 48675 | Sbjct 58849 T 58849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931500638830080