Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12 194 3e-44 seq55 163 5e-35 seq439 159 6e-34 >seq12 Length=196586 Score = 194 bits (214), Expect = 3e-44 Identities = 555/848 (65%), Gaps = 21/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || |||||| || || ||| ||||||| | Sbjct 58855 TGGCAGATGTACAAGAAGGCGGAGGCTTCCTTCTGGACGGCTGAGGAGCTTGATCTCGTG 58796 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| | || | | |||||| ||||| ||||| ||||| Sbjct 58795 CACGACCTGAAGGACTGGGGCAACCTCACGGATAACGAGCGCCATTTCATCAAGCACGTG 58736 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || ||||| || ||| || ||||| ||||||||||| ||| | || |||| | Sbjct 58735 CTCGCTTTCTTCGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGC 58676 Query 25660 AGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | || |||||| | | || || | || |||||||| |||||||| ||||| || || Sbjct 58675 AATGAGGTGCAGGTGCCTGAAGCTCGC-TGCTTCTACGGCTTCCAGATTGCCATTGAGAA 58617 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGA 25775 | ||||| ||||| || | ||| || || |||||||| | ||| | || Sbjct 58616 CATTCACTCGGAGGTCTACTC---GCTGCTCATCGACACGTACATCAAGGACACCATTGA 58560 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || || | || | |||| |||||| ||| ||| | | ||| |||||| || Sbjct 58559 GAAGGACCACCTTCTGCGTGCTATCGAGACCATTCCCTGTGTGCAGAAGAAGGCTAACTG 58500 Query 25836 GGCCATGAAGTGGA-TCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| | | |||| | | | || | | | | | | ||||| ||||| || || | Sbjct 58499 GGCCCTCAGGTGGTGTGACCCGCGTGTGTCATCC-TACGCGGAGCGTCTGGTTGCTTTCG 58441 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 |||| ||||||||||| || || || || || ||| ||||||||||||||||| || Sbjct 58440 CTGCGGTGGAGGGCATTTTCTTTTCGGGATCCTTCTGCT-CCATCTTCTGGCTCAAGAAG 58382 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| || ||||||||||| ||| | |||||||| | Sbjct 58381 CGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATG 58322 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 |||| ||||| || ||||| || || | | | | || || || || | |||| Sbjct 58321 CACACCGATTTCGCGTGCCTCCTGTATTC---CAAGCTCGTCAAC-AAGCTGCCGGAGAG 58266 Query 26074 AC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | | || | ||| | | ||||||| ||||||| | |||||| Sbjct 58265 CCGCATCCATGAGATCGTTCGCAACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTC 58206 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | ||||||||| |||||| |||| ||||| |||| ||| Sbjct 58205 GCTTCCGGTGGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGT 58146 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAACCCG 26250 ||| |||| ||||||| | ||||| | ||| ||||| ||||| |||||| Sbjct 58145 GGCTGACCGCCTGCTGTACTCTCTGGGCGTGTCCAAGATCTAC--CACGCCAAGAACCCG 58088 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 ||||||| ||||| | || ||| | | || |||||||||||||| || ||| | || Sbjct 58087 TTCGACTGGATGGACATGATCTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTG 58028 Query 26311 GGCGACTA 26318 ||||| || Sbjct 58027 GGCGAGTA 58020 >seq55 Length=127487 Score = 163 bits (180), Expect = 5e-35 Identities = 378/562 (67%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| || | || |||||| ||||| || | || |||| Sbjct 36298 TGGCAGATGTACAAGAAAGCCGAGGCATCTTTCTGGACTGCCGAGGAACTCGACCTGGTA 36239 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || ||| |||| | || | | | |||| || || ||||| ||||| Sbjct 36238 CACGACCTGAACGACTGGGCCAAGCTGACGGACAATGAGCGCCACTTCATCAAGCACGTG 36179 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || || || ||||| ||| ||||| || |||||||| || | || |||| | Sbjct 36178 CTCGCCTTTTTCGCAGCAAGTGACGGTATCGTTAACGAGAACCTAGCCATGAACTTCAGC 36119 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || | ||| ||| |||||| || ||||||||||||||||| ||||| || Sbjct 36118 AATGAGATCCAG---GTGCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATAGCCATTGAG 36062 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773 ||| | ||||| || || || || || ||||| |||||||| | ||| | | Sbjct 36061 AATATCCACTCGGAAGTTTACTCC---CTGCTGATCGACACGTACATCAAGGACACAGTC 36005 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| |||| ||| | ||||||||||| || || | | | | ||||||| Sbjct 36004 GAGAAAGATTATCTGCTGCGTGCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAAC 35945 Query 25834 TGGGCCATGAAGTGGA-TCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | | |||| | | | | | | || | | ||||||||| | || || Sbjct 35944 TGGGCTCTCAGGTGGTGTGATCCTCGTGTGT-CTTCTTACCCGGAGCGGCTGCTGGCGTT 35886 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || || |||||||||||||| ||| || ||||| ||| | ||||||||||||||| Sbjct 35885 CGCAGCAGTGGAGGGCATCTTCTTCTCGGGATCGTTCTGCT-CGATCTTCTGGCTCAAGA 35827 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || || ||| || |||||| | |||||| |||||||||| Sbjct 35826 AGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAA 35767 Query 26012 TCCACAGAGATTTTGCCTGCCT 26033 | |||| ||||| |||||||| Sbjct 35766 TGCACACGGATTTCGCCTGCCT 35745 >seq439 Length=25118 Score = 159 bits (176), Expect = 6e-34 Identities = 699/1090 (64%), Gaps = 47/1090 (4%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-CGGGA- 221476 || || | ||| |||||||||||| ||||| ||||||||||| |||||| | || Sbjct 18076 CATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGGCT 18135 Query 221477 ---GAAGTGA-AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| || || ||| ||| || ||| | |||| ||||| ||||| || ||||| Sbjct 18136 CTCGAACGGATAGTTCAT---CAGAAT--GAACG-CGTCAGCCAGACCCTGAACACCGAT 18189 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||||| ||| | ||| | | ||||||| | || || |||||| || ||||||| Sbjct 18190 ACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGAC 18249 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| || || | || | || || ||||||||| ||||||||||| Sbjct 18250 GTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTA 18309 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 |||| ||||| || || ||||| || | || || || Sbjct 18310 GCTGAA----AACTC-CCTCC-------------TCCACGAACTTGGGGAGCGCGACAGA 18351 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| || ||||| ||||| || || || |||| || | ||| || | Sbjct 18352 GGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTCACAGCACAA 18411 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||| | ||| || ||||||| | || || || ||||| || || |||||||| Sbjct 18412 GTTACTGGAACGGATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTAGCTGCGTCCTT 18471 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||||||||| || || | || || || | ||| || | || ||| | ||| || | Sbjct 18472 GTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAACCACAGCTG 18531 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 |||| | | | ||||| |||| | | ||| || ||| ||||| | Sbjct 18532 CTGGGCGTTGA---TGGTCTTGCGAGCACGCCCTTCCTTCTCGTACTTCTCGTAGAGGGT 18588 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||||| |||||| | ||||| || || ||| ||||| | || ||| Sbjct 18589 CTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAGAACAAACT 18648 Query 222013 CCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||| |||| ||| | | ||||| | ||||||||| || || | ||||| || | Sbjct 18649 CCA---CTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAATGCGTA 18705 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || | || | | || || ||| |||| || || | ||||||| ||||| Sbjct 18706 GAACAAGTCACGAGCACGGTGGAGCTCGTTACCGTGATTCTTGCGGAGATCCAGGAACTC 18765 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | || ||||||||||||||||| |||| ||| | | ||| |||||| || Sbjct 18766 GAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTTGCCTCC 18825 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| ||||| | | | | ||||||| | | | || | | ||| || Sbjct 18826 TCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAATTCCATT 18885 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCAGAC- 222307 ||| ||| || ||||| ||||| || || | | | || || || ||| || Sbjct 18886 GGAGGAACCATTCGTGCCGCGGATGTA-GC-TGTTCGTCGCAC-GGATATTGTGCATACT 18942 Query 222308 -ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 ||||| ||||| || || || ||||| ||| || ||| | ||||| ||| Sbjct 18943 AATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTAGAT 19002 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGG 222425 |||||| || ||||| |||| | || ||| || ||||| |||| || | | ||| Sbjct 19003 GCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCGTGG 19062 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485 || | || || || |||||||| || | ||||| || || | | |||||||| | Sbjct 19063 TGTACCA-GCATTGAACAGCGTCGGGGTAGCGTGAGTGAAAAACTTCTGCGACATCAGCT 19121 Query 222486 CGTACGTCTC 222495 |||||||||| Sbjct 19122 CGTACGTCTC 19131 Score = 104 bits (114), Expect = 4e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 221063 CGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACC 221122 |||| ||| |||||| | |||| || |||| | || | || || ||||||||| Sbjct 17726 CGCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACG 17785 Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 | ||| || || | ||||| | | | ||||| ||| || ||| |||| ||||| Sbjct 17786 ATCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATA 17845 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||||||||||||||| || || || |||||||| ||||||||||| Sbjct 17846 GACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGC 17905 Query 221243 CTGTTGCGCAGTCCG 221257 |||||| || ||| Sbjct 17906 GAGTTGCGAAGACCG 17920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812731633280