Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq439 84.2 1e-11 >seq439 Length=25118 Score = 84.2 bits (92), Expect = 1e-11 Identities = 304/471 (65%), Gaps = 6/471 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| ||| ||| | |||| ||| || | | ||| || | ||| || Sbjct 18631 ATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGG 18690 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | ||||| ||| || || || || | || | || || ||||||||||| Sbjct 18691 CACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCTCGTTACCGTGATTCTTGCG 18750 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||||| | ||| || || | ||| | |||||| || || | ||||| || || || Sbjct 18751 GAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCC 18810 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 || | || ||||| || || || ||||| | || || |||||||| ||| ||||||| Sbjct 18811 CTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACAT 18870 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG--GATCCTGTCGATCTA 26185 || | | |||| | || | || || |||| | || | | | || |||| | Sbjct 18871 GGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTC--GTCGCACGG 18928 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-CTGA 26244 |||| ||| | ||| || || || |||||||| || || || ||||| | || Sbjct 18929 ATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTC 18988 Query 26245 AACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGA 26304 || || ||| | || || | || ||| | | ||| | || | || ||||| || Sbjct 18989 AA-GGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGA 19047 Query 26305 TAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGT 26355 ||||||| | | ||| || | ||| || | ||||| ||||| ||||| Sbjct 19048 CAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGT 19098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253031482199150