Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq129 158 4e-33 seq439 113 1e-19 seq224 109 2e-18 seq4 93.3 1e-13 >seq129 Length=64470 Score = 158 bits (174), Expect = 4e-33 Identities = 254/359 (71%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 302491 TCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGG 302548 || || || || || ||||| |||| |||||| || | | || | ||| | || | Sbjct 13247 TCCATACCATCCTCACCGTACAGGAA--CTGAATAATCTCGCCCTGGGCATTACGCACTG 13304 Query 302549 TCATATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAA 302607 | |||||| | |||||| || || |||| ||| | | |||||||||||||||| Sbjct 13305 TACCATCATAGCGCGTCATAACTGACT-CCATTGCCTTCACAAGACGACGCTGAATATAA 13363 Query 302608 CCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGG 302667 || ||| || ||| || || ||||||||||| ||||| |||||||||||||||| ||| Sbjct 13364 CCGGTTTCAGCTGTCTTCACGGCTGTATCAATCAGACCTTCACGACCACCCATAGCGTGG 13423 Query 302668 AAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCC 302727 ||||| | ||||| |||| | ||| | | ||| |||| ||||||||||| | Sbjct 13424 AAGAAGAACTCTTGCGGTGTCAAACCCTTTAGGTACGAGTTCTCCACGAAACCACGACTC 13483 Query 302728 TCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTAT 302784 ||||| | ||| || |||| | |||| ||||| || | | | | || || Sbjct 13484 TCGGGACCCAGATCATC---CTTGCCATAGTGAGGCAGCGTACGATGGTTGAAACCATAC 13540 Query 302785 GGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||||||| || ||||||||||| || |||| || | ||| |||||||| ||||| Sbjct 13541 GGAATACGCTTACCTTCAACGTTCTGTTGACCCACACAAGCAATAATCTGCGAGATATT 13599 >seq439 Length=25118 Score = 113 bits (124), Expect = 1e-19 Identities = 265/397 (67%), Gaps = 5/397 (1%) Strand=Plus/Plus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||| || || || | ||| || | ||| | || |||||||| || Sbjct 18737 CCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAG 18796 Query 156039 ATAGCAAAACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTG 156095 || || || || || | |||||| || ||| || || || ||||| || | |||| Sbjct 18797 ATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTG 18856 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT-GCGA 156154 ||||| | | ||| || ||||| |||||||| | ||||| || ||||| || | || Sbjct 18857 AAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTG 18916 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 | | | || | ||| || ||| | |||||||| || | ||| || || || Sbjct 18917 TTC-GTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCA 18975 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 || || | ||| | || | | | || || || || || ||||| | ||| | | || Sbjct 18976 GGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAG 19035 Query 156275 ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 |||| || ||||| ||||||||||| ||||| ||||| || || || || || || Sbjct 19036 GAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTG 19095 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 | | ||| |||| | ||||| ||||| |||||| Sbjct 19096 AGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCC 19132 >seq224 Length=46839 Score = 109 bits (120), Expect = 2e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | ||| || ||| ||||| || |||| ||| || || || | | | || Sbjct 19239 GGCGATGATACCGCAGATATCGCACACGTGCACGCGGTAGGCGTCCGAGTTGGCGAACAG 19180 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || |||| | | ||||| || |||| |||||| |||||||| || || Sbjct 19179 GCGGTCCATGAGGAAGTTGGCGGAGCCGTGAGAGATCAGACAATCGCGCTCCATCTCTCC 19120 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| |||||||| | ||||| ||||| || || || | || Sbjct 19119 CATACGCAGACCACCTTCGCGAGCTCGCCCCTCCATGGGCTGGCGCGTCAGCATCGTCAC 19060 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| |||||||||||||| Sbjct 19059 GGGACCACGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAGACGCTGGTAGAA 19000 Query 251643 TGCGGGACCGATGAAGAT 251660 | ||| ||||||||||| Sbjct 18999 CGTGGGTCCGATGAAGAT 18982 >seq4 Length=231283 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 353940 GGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGAT- 353998 ||| ||||| | ||| |||| || || || | || |||| |||||| || | | Sbjct 218466 GGGTCAGAG--CCGAAGAGAACTCGTTGTGGTGGGTAATCATAACCACACCACC--GTTG 218411 Query 353999 AGCTC-TTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057 | ||| ||||| || | || || |||||||||||||| ||||| ||| | || || || Sbjct 218410 AACTCCTTAATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGC 218351 Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117 || ||||| | |||| ||| || | || |||||| || || |||| || ||||| ||| Sbjct 218350 TCATCAAGCACCAGAATGTGGGGGTTCAGCCACATGGCAGCGGCCAACACGACCTTCACC 218291 Query 354118 TTCTGTCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACT 354163 ||||| || || || || | | || ||| | |||||||||| Sbjct 218290 TTCTGGCCACCGGACAGACCACGCATACGGGAGTGCGTACCGAACT 218245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471765515134794