Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq439 129 5e-25 seq1294 109 5e-19 seq168 109 5e-19 seq122 95.1 1e-14 >seq439 Length=25118 Score = 129 bits (142), Expect = 5e-25 Identities = 355/538 (66%), Gaps = 17/538 (3%) Strand=Plus/Plus Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 ||||| ||||| ||||| || |||| | || | || || || || | || ||||| Sbjct 17755 GATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACG 17814 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 ||| |||||| ||| | ||||| | || |||||||| ||||| |||||||| || Sbjct 17815 GTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGT 17874 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATT-C 138655 | || ||||||||| ||||||| || || || || | |||||| |||||| | Sbjct 17875 AGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTG---CTTGATCAC 17931 Query 138656 GTTC--CTTGAGCGACGACCAGTCCCACA---AATCGCTAGGTTTTTTGTTCCACATATC 138710 |||| |||||| | | ||||||||||| | ||| | | |||||| || Sbjct 17932 GTTCTCCTTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGCGTCACGCCCCACATGTC 17991 Query 138711 GTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTC 138770 | |||| || | ||| || || || ||| | | ||| || || || ||||| Sbjct 17992 GAACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATAGGGCCCCAACTC 18051 Query 138771 TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTG 138830 | ||| | ||| | || ||| | | ||| ||||| || || ||| || | || Sbjct 18052 CTTCGCAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTT 18111 Query 138831 ATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGC 138890 ||||| | ||||| ||||||| |||| | | || |||||||||| || Sbjct 18112 GTTGAGTTCGCTGGCCTGCTGGCTCTCGAACGGATAGTTCATCAGAATGAACGCGTCAGC 18171 Query 138891 CAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTT 138949 ||| || || || || | ||||| ||||| ||||||| || ||| ||||| || | Sbjct 18172 CAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGAC----TTGCGAGCCT 18227 Query 138950 ---CGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 | | || || ||||| || ||||||| ||||| | ||| ||| |||||||| Sbjct 18228 CCACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTT 18285 >seq1294 Length=4314 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || ||||| || || || | | Sbjct 4065 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 4124 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || ||||| || || Sbjct 4125 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4184 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 4185 CAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 4244 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| ||||| ||||||| ||| Sbjct 4245 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4292 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || || || || || ||||| || || || | Sbjct 3834 ACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCG 3893 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || ||||| || Sbjct 3894 TCGGACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGAC 3953 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||| ||||| || ||||||||||| | | || || || Sbjct 3954 CAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTAC 4013 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| ||||| ||||||| ||| Sbjct 4014 AACATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 4064 >seq168 Length=56023 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || ||||| || ||||| || || || || | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || |||||||| || ||||| || || || ||||| || || Sbjct 52013 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52072 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || |||||||||||| | | || || || ||| Sbjct 52073 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52132 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| | || |||| || ||| Sbjct 52133 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 52180 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || ||||| ||||| || || | | Sbjct 51724 GATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCGTC 51783 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || | || || |||||||| || ||||| || || || ||||| || || Sbjct 51784 GGATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 51843 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||||||| | | || || || || Sbjct 51844 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 51903 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| | || |||| || ||| Sbjct 51904 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 51952 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || ||||| || ||||| || || || || | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || |||||||| || ||||| || || || ||||| || || Sbjct 52241 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52300 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || |||||||||||| | | || || || ||| Sbjct 52301 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52360 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| | || ||||||| || Sbjct 52361 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGG 52407 >seq122 Length=66504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 10893 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 10952 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| |||||||| || || || || Sbjct 10953 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 11012 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 11013 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 11047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449882067285360