Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq75 86.0 5e-11 >seq75 Length=108044 Score = 86.0 bits (94), Expect = 5e-11 Identities = 188/281 (67%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||| || || ||||| || ||||| |||| | || | |||| ||| || | ||| Sbjct 5142 ACAAGGCGGTTGTCAAAGTCCTCACCGCCCAGATGCGTGTCGCCTGCCGTCGCCTTCACT 5201 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | || ||||||| | | || | || ||| || ||||| || | |||| Sbjct 5202 TCGAAGATCCCTTCTTCAATGGTGAGCAGCGAGACGTCAAACGTCCCACCGCCAAGATCA 5261 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || || || || ||| | |||||||||||||| || | ||||||| Sbjct 5262 AAGATCAGCACGTTGTGCTCGCCCCCTT---TCTTATCAAGACCATAGGCGATAGCAGCA 5318 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 ||||| || || || || || | | || || | ||| ||||| ||| ||||| || Sbjct 5319 GCAGTCGGCTCGTTGATGATACGGAGTACGTTCAAACCGGCAATAACTCCGGCATCCTTG 5378 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || | || || ||||| || || || || || || Sbjct 5379 GTCGCCTGGCGCTGCGAGTCGTTGAAGTAGGCTGGGACCGT 5419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740494797472212