Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq122 109 4e-19 seq1294 102 5e-17 >seq122 Length=66504 Score = 109 bits (120), Expect = 4e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 11080 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 11021 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||| || |||| | ||||| ||||| |||||||| || | ||| ||| Sbjct 11020 AGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 10962 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | ||||| | |||||||| | |||||| || || || || | || || ||||| Sbjct 10961 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 10902 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 10901 GATCTGCAT 10893 >seq1294 Length=4314 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || ||||| ||| || || |||||||| ||| Sbjct 4063 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4004 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| || || ||||| || ||||| |||||||| || | || Sbjct 4003 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 3944 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||||| |||| | | ||| | | ||| | ||||| Sbjct 3943 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCAC 3885 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 ||| | ||||||||| || || || || || || || ||||||||||| |||| Sbjct 3884 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATTGTTG 3832 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || ||||| ||| || || |||||||| ||| Sbjct 4291 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4232 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| || || ||||| || ||||| |||||||| || | || Sbjct 4231 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 4172 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||||| |||| | | ||| | | ||| | ||||| Sbjct 4171 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCAC 4113 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | ||||||||| || || || || || || |||||||||||||| Sbjct 4112 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692935207040