Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1294 109 1e-18 seq439 87.8 4e-12 seq168 87.8 4e-12 >seq1294 Length=4314 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || |||||||| |||| ||||| || ||| Sbjct 4068 CAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 4127 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || || || ||| || ||| || Sbjct 4128 TCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 4187 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4188 CGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAACATC 4247 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||||| || || |||| || Sbjct 4248 CAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCG 4285 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| |||| ||||| || ||| | |||| || ||||| Sbjct 3861 ACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCTATCGACAACGTGAAGCAG 3920 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| || ||| || || | ||||||||||| ||| Sbjct 3921 AAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGATTGATCTTCGCCGGCAAG 3980 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| ||||||||||||||| Sbjct 3981 CAGCTGGAGGACGGTCGTACGCTGAGCGACTACAACATCCAGAAGGAGTCTACTCTTCAC 4040 Query 206374 CTTGTTTTGAGACTTCG 206390 || || || |||| || Sbjct 4041 CTGGTGCTGCGACTGCG 4057 >seq439 Length=25118 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 ||||||||||||| ||||| |||| ||| || || || | | || | | Sbjct 18464 GCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAAC 18523 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 || || | ||||| || | ||| | | || | ||||| || ||||| |||| ||| Sbjct 18524 CACAGCTGCTGGGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTCTCGTACTTCTCGTAG 18583 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 ||| || || || | || | |||| || || |||||||| || ||||| || Sbjct 18584 AGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAGAAC 18643 Query 173287 AGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCGCG 173346 | |||||| || |||| || ||| ||||| ||||||||||| |||| ||| | ||| Sbjct 18644 AAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAATGCG 18703 Query 173347 TAGAACAA 173354 |||||||| Sbjct 18704 TAGAACAA 18711 >seq168 Length=56023 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||| || | || ||||| || || Sbjct 51728 CAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCGTCGGAT 51787 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || |||||||||||||| || || || || || || ||| || Sbjct 51788 TCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 51847 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| ||||| | ||| || || |||||| || Sbjct 51848 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAACATC 51907 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 51908 CAGAAGGAGTCGACGCTGCACCTGGT 51933 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || ||||| || | || ||||| || || Sbjct 52184 CAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCGGAT 52243 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || |||||||||||||| || || || || || || ||| || Sbjct 52244 TCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 52303 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| |||| ||||| | ||| || || |||||| || Sbjct 52304 CGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAACATC 52363 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 52364 CAGAAGGAGTCGACGCTGCACCTGGT 52389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181778977577802