Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq168 105 6e-18 seq1294 102 8e-17 seq439 89.7 5e-13 >seq168 Length=56023 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| || |||||||||||||| |||| || Sbjct 52174 ACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGT 52115 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| |||||||| || || ||||| ||||| Sbjct 52114 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 52055 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| ||||| || | | || | | ||| | ||||||||| || | Sbjct 52054 CTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCAAG 51995 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| ||||| |||| || || | ||| ||||||||| Sbjct 51994 GGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| || || ||||||||||| |||| || Sbjct 51946 ACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGT 51887 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| |||||||| || || ||||| ||||| Sbjct 51886 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCC 51827 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| ||||| || | | || | | ||| | ||||||||| |||| Sbjct 51826 CTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACGTCGAG 51767 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||| || || || | ||| |||||||| Sbjct 51766 GGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| |||| || || ||| || ||||| || || | Sbjct 52374 GACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 52315 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| ||||| || || || ||| ||||| || | Sbjct 52314 AAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACG 52255 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||||||| || | || | ||| ||||| |||| || || Sbjct 52254 TTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTG 52195 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 52194 ACGAAGATCTGCATG 52180 >seq1294 Length=4314 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| ||||| || || ||||| || |||| Sbjct 4030 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCG 3971 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| || || ||||| ||||| || || || ||| || || |||| Sbjct 3970 AAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 3911 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||| || | ||| | ||| || || |||| ||| || Sbjct 3910 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 3851 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3850 ACGAAGATCTGCAT 3837 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| ||||| || || ||||| || |||| Sbjct 4258 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCG 4199 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| || || ||||| ||||| || || || ||| || || |||| Sbjct 4198 AAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 4139 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||| || | ||| | ||| || || |||| ||| || Sbjct 4138 TTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTC 4079 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 4078 ACAAAGATCTGCATG 4064 >seq439 Length=25118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 |||||||| || |||||||| | | |||| ||| ||| | ||||| | |||||| Sbjct 17792 AACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCG 17851 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 || ||||| | || || || || | || || |||||| ||||||| || || || Sbjct 17852 TTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTG 17911 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACA---TCGACGAG 147081 || ||||||| | | ||| ||||| | || ||||||||||| || || Sbjct 17912 CGAAGACCGTGCTTGATCACGTTCTCCTTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAA 17971 Query 147082 GGCGTCACGTTCCACATGTCGTACTGGA 147109 ||||||||| |||||||||| |||||| Sbjct 17972 GGCGTCACGCCCCACATGTCGAACTGGA 17999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594744998320