Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1294 156 4e-33 seq168 113 4e-20 seq122 107 2e-18 >seq1294 Length=4314 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || |||||||| ||| | Sbjct 4291 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4232 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || ||||| ||||||||||| | |||| Sbjct 4231 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 4172 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||||| ||||||| |||| | | | ||| || ||||| Sbjct 4171 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCAC 4113 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || ||||||||||| |||||||| |||||||| Sbjct 4112 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || |||||||| ||| | Sbjct 4063 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4004 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || ||||| ||||||||||| | |||| Sbjct 4003 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 3944 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| ||||| ||||||| |||| | | | ||| || ||||| Sbjct 3943 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATAGAGTCCGACGGCTCCAC 3885 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||||||||| || ||||||||||| ||||| || ||||||||| Sbjct 3884 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 3836 >seq168 Length=56023 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| ||||||||||| || || || || | || || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | ||| | || |||||||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||||||||| | |||| | | | || || ||||| || | || ||||| | Sbjct 52042 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||||| || || || || |||||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || || || | || || Sbjct 52390 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52331 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | ||| | || |||||||||| Sbjct 52330 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52271 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||||||||| | |||| | | | || || ||||| || | || ||||| | Sbjct 52270 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCAAGGGTAATCGTCT 52212 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||||| || || || || |||||||| Sbjct 52211 TACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || || || | || || Sbjct 51934 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 51875 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | ||| | || |||||||||| Sbjct 51874 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 51815 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||||||||| | |||| | | | || || ||||| || | || ||||| | Sbjct 51814 AATCTTTTGCTTGA-CGTTGTCGATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCT 51756 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | || || || || |||||||| Sbjct 51755 TGCCAGTGAGGGTCTTGACGAAGATCTGCAT 51725 >seq122 Length=66504 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 11082 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 11023 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | | ||||||||| ||| || ||||| | | ||| Sbjct 11022 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 10964 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | ||||| || ||||| |||| |||||| || || ||||||| || |||||| Sbjct 10963 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 10904 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 10903 AAGATCTGCAT 10893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450778036350960