Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq55 114 2e-20 seq439 91.5 2e-13 >seq55 Length=127487 Score = 114 bits (126), Expect = 2e-20 Identities = 367/563 (65%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||||||||| || || | ||||| || | || || | ||||| || | Sbjct 35740 ACATGAGGCAGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGA 35799 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | |||| |||||||| || || ||||| |||||||| || || | |||| || ||||| Sbjct 35800 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGATCCC 35858 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||||||||| || |||||||| || || | || | ||| |||| | || Sbjct 35859 GAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACA 35918 Query 39788 TTATGTAT----CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | | || |||| | | ||||| | || ||||| | ||||| || || || || Sbjct 35919 CGA-GGATCACACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTC 35977 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || ||| | ||||||| ||| || | | || || | || || || || | ||| Sbjct 35978 GATGGCACGCAGCAGATAATCTTTCTCGACTGTGTCCTTGATGTACGTGTCGATCAGCAG 36037 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | ||| || ||||| || ||||| || ||||| || ||||| || || | || Sbjct 36038 GGAGTAAACTTCCGAGTGGATATTCTCAATGGCTATCTGGAAACCGTAGAAGCAGCGGGC 36097 Query 39964 TTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || | | || | ||| || || || | || | || || || || || || Sbjct 36098 CTCGGGCACCTGGATCTCATTGCTGAAGTTCAT--GGCTAGGTTCTCGTTAACGATACCG 36155 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT 40081 ||||| || || ||||| || | || || || || || | |||| | |||| Sbjct 36156 TCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAAGTGGCGCTCATTGTCCGTCAGC 36215 Query 40082 TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC 40141 || |||||| || | || | | | || | ||| || || ||||| || || ||| Sbjct 36216 TTGGCCCAGTCGTTCAGGTCGTGTACCAGGTCGAGTTCCTCGGCAGTCCAGAAAGATGCC 36275 Query 40142 TCTGCCTTTTTGTACATGTTCCA 40164 || || || |||||||| | ||| Sbjct 36276 TCGGCTTTCTTGTACATCTGCCA 36298 >seq439 Length=25118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 779/1244 (63%), Gaps = 28/1244 (2%) Strand=Plus/Plus Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT-TGTGCTTCTAGACTATCGA 69067 |||||| || || || ||||| || ||||| ||||| || || || || | || |||| Sbjct 18082 ACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTGG-CTCTCGA 18140 Query 69068 ATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTC 69127 | ||||| | | ||||| || || || |||| |||||||| || ||||||| || | Sbjct 18141 ACGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGC 18200 Query 69128 TATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || | | | || || ||| | ||| || | || || || || | || || | Sbjct 18201 GGTGGCGCATGTTGGA-CTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACC 18259 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAA-TCAAATCG 69245 || || ||||| || || || || ||||| || | || || | | | ||| | Sbjct 18260 TTGTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAAC- 18318 Query 69246 TCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 ||| || || ||| | || || ||||| || | ||| || || || || |||| Sbjct 18319 TCCCTCCTCCACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATC 18378 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 | | | || | || | ||| || | ||||| | ||| || ||||| || Sbjct 18379 GGGAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTT 18438 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 ||||| || || |||| ||||||||||| || || || || ||| ||||| Sbjct 18439 CTGCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTC 18498 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA-- 69483 |||||| | || | || | ||| | | || || || ||||||| | Sbjct 18499 AATCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGGGCGTTGAT---GGTCTTGCGAGC 18555 Query 69484 -CGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCA 69540 ||| || || || || || | ||| | | | || || || || ||||| || Sbjct 18556 ACGCCCTTCCTTCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCG 18613 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | ||||||| |||||| ||||| | ||| |||| ||| ||| || | | Sbjct 18614 TAGAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTT 18673 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| || |||||||| | ||| | || || || || || | | | | || Sbjct 18674 TTCATGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTC 18732 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 || || ||| || ||||| || ||||| | | ||| | ||||| || || || Sbjct 18733 GTTACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAG 18792 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 || || || | | ||| || || ||||||||| || | ||| | || || | Sbjct 18793 GTAGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATC 18852 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 ||| ||||||||| ||| || ||||| ||||| || |||||| || || || || Sbjct 18853 ATTGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTA 18912 Query 69840 ACT--TCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAG 69897 || || || || || ||||| ||| | || || ||||| ||| || ||| Sbjct 18913 GCTGTTCGTC--GCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAG 18970 Query 69898 ATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTT 69956 || ||||| | ||||| ||||| || || ||||| || ||||| ||| | Sbjct 18971 ATGCAGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCC 19030 Query 69957 AAGAAGAA--AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGA 70014 || | ||| || || |||| ||| | || || || ||||| || | || || Sbjct 19031 AACAGGAAGCAAGAG---GACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGG 19087 Query 70015 GATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATA 70074 | ||||||||||| | || | || | ||| | ||| || || | ||||| | || Sbjct 19088 GTAGCGTGAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATG 19147 Query 70075 TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTT 70134 || | || || || || | || || ||||| | ||| || || || ||||| ||| | Sbjct 19148 TCACTCTTGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACT 19207 Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 || ||| | || |||||| | | |||| || || || || || |||| ||| Sbjct 19208 TTGCCATTGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTAC 19267 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTT 70238 ||||| | |||| ||||| | || || || | ||||| Sbjct 19268 TCGAAGTCCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686885084473680