Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq439 205 1e-47 seq55 120 4e-22 seq152 87.8 2e-12 >seq439 Length=25118 Score = 205 bits (226), Expect = 1e-47 Identities = 1160/1825 (64%), Gaps = 52/1825 (3%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || | ||||| ||||| | ||||| || | ||||||| Sbjct 17480 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTG 17539 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG-CGCCC 110487 ||||| || | ||| || ||| | ||||| ||| |||| || |||| Sbjct 17540 CTAATCGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGCCA 17599 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAG 110547 | || | || | || || | ||| ||||| ||| || ||||| || || || Sbjct 17600 CGGTCG-GCAGACAGGTCCAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTT 17658 Query 110548 ATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCAT 110607 | ||||| | || ||||| | | ||||| | ||| || || | |||| || Sbjct 17659 CTCCTTGACGTGGTCCGGGATTACCTTCACGTTCTGCACGGAGCCGCCGTCGTTCAGGAT 17718 Query 110608 GAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTT 110667 | | || ||| | ||||| ||| | | | || || || | |||| ||| Sbjct 17719 CTGGTTGCGCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCATCAGGTACTT 17778 Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||| || || ||||| ||||| || | | ||| ||||| | ||||| || Sbjct 17779 GTTCACGATCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACGTGTACGG 17838 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || | | || || || |||| ||| || || || || || || ||||| || |||| Sbjct 17839 CTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGGGAGCCAC 17898 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTC 110844 || || ||| |||||||| | || |||| ||||| |||||| | ||||||| Sbjct 17899 CAGCAGCGAGTTGCGAAGACCGTGCT---TGATCACGTTCTCCTTGAGGGTAGCCCAGTC 17955 Query 110845 GTAGTTG----AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGGGAC 110899 | | | || |||| |||||||||| ||||| | || |||||| | Sbjct 17956 CCACAGGCCAGAAGAAGGCGTCACGC-CCCACATGTCGAACTGGAAGACACCCTTGCTA- 18013 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT-CGC 110958 || || || |||| || || ||||||| || | | || | || || | || Sbjct 18014 GCTGGCGAGCCCTGGAACGTCTCATAGGGCCCCAACTCCTTCGCAATCTC-CATCGACGT 18072 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 ||||| ||| ||| || ||||| || ||||| || | || |||| | | Sbjct 18073 CTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCTG 18132 Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 || || | ||| || ||| || | || || ||||| |||||||| | ||| Sbjct 18133 GCTCTCGAACGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACC 18192 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 | || | ||| ||||| || ||||| || || | | ||||| || | || ||| Sbjct 18193 GACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTC 18252 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA-T 111197 ||||| ||| ||||| || || | ||| | || | || || | || | Sbjct 18253 GATGACCTTGTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCT 18312 Query 111198 CAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 111257 |||| | | ||| || || |||| || || |||| || ||||||||||| | Sbjct 18313 GAAAACTCC----CTCCTCCACGA---ACTTGGGGAGCGCGACAGAGGCCAAATTGCACA 18365 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT---GGAACTCT 111314 ||||| ||||| | |||||||| | | || || ||||| ||||| Sbjct 18366 CAGCCACTTCATCGGGAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGG- 18424 Query 111315 TAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGT 111374 ||||| |||| |||| ||||| || ||| || ||||||||||||||| Sbjct 18425 --ATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGA 18482 Query 111375 AGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTA 111434 | ||| ||||| || |||| | | || || || ||| || | || | || Sbjct 18483 AAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAACCA--CAGCTGCTGGGCGTT 18540 Query 111435 CAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 | ||| ||| || || || ||| ||||||||| |||||||| |||||||| | Sbjct 18541 GA-TGGTCTTGCGAGCACGCCCTTCCTTCTCGTACTTCTCGTAGAGGGTCTCAAACTCTT 18599 Query 111492 CACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 ||||| | || ||| |||| || || || | | |||||||| | | ||| | ||| Sbjct 18600 CACCC-CAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCA 18658 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 |||| |||| |||||||| || || || | ||||| | | || | || | | Sbjct 18659 TTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAATGCGTAGAACAAGTCACGA 18718 Query 111611 -CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 111669 ||| | | || ||| ||| || || || | || |||||||| | | ||| || Sbjct 18719 GCACGGTGGAGCT-CGTTACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGC 18777 Query 111670 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTAC 111726 |||||| ||||| || |||| |||| || ||||| || || || || | || Sbjct 18778 GTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCAC 18837 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || || | || || || | | ||| || ||||| |||| || |||||| Sbjct 18838 GTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATT 18897 Query 111787 TGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 || || || || || | || | || | | || || || || |||||||| | Sbjct 18898 CGTGCCGCGGATGT-AGCTGTTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTC 18956 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||||||||| ||||| ||||||| | | | || | ||||| || | ||| |||| Sbjct 18957 CAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGT 19016 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | |||| | || | ||||||||| ||||| ||||||| ||||||||||||||||| Sbjct 19017 CATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGA 19076 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 | || || || || |||||| |||| | || | || |||||| ||||| ||||||| Sbjct 19077 ACAGCGTCGGGGTAGCGTGAGTGAA-AAACTTCTGCGACATCAGCTCGTACGTCTCCAGA 19135 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | | | ||||| | |||||| |||| || || ||||| | ||| | || || Sbjct 19136 GCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGA 19195 Query 112085 GTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGAC 112142 ||||| | |||||| || || ||||| || | |||| | ||| |||| | Sbjct 19196 CGTTCCACCACTTTGCCATTGACACG--GAAGAGGTATCCTCTCTCCAAGGTCTTGAAGC 19253 Query 112143 CAAAGTAACCAAAATCATAGTCCCG 112167 | ||||| | | || ||||||| Sbjct 19254 CGAAGTAGTCGTACTCGAAGTCCCG 19278 >seq55 Length=127487 Score = 120 bits (132), Expect = 4e-22 Identities = 351/536 (65%), Gaps = 30/536 (6%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || |||||||| ||||| || ||||| ||||| || | || || | ||||| Sbjct 35463 TACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATC 35522 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||| |||||||||||| |||| |||| | ||| || | | | || || ||| Sbjct 35523 CAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCGA 35582 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-ACA 122549 || | ||| |||||||||||| | |||| | | |||||||| ||||| | | ||| Sbjct 35583 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCCGATCAACTCCACA 35642 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| | ||| | | |||| | | |||||| || || || | | Sbjct 35643 -GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTC------------GCG 35689 Query 122610 GATAGTTTCG-GTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCC----AC------- 122657 ||| ||||| ||| || || | ||| | || | ||||| | || Sbjct 35690 GATGATTTCGTGTACGCGG-CTCTCCGGCAGCTTGTTCACGAGCTTCGAGTACATGAGGC 35748 Query 122658 -GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGAC 122716 ||| || ||| ||| | ||||| || ||| || | || || ||||||| |||| Sbjct 35749 AGGCGAAATCCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGAC 35808 Query 122717 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 122776 | |||||||| || |||||||| | ||| | || | |||||| || || |||||||||| Sbjct 35809 CAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAGAAGAAGA 35868 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCG-TTCGGCGAAGGAGCGAGACTTTGCATCA 122835 | |||||||| || ||||| | || || | ||| ||| || | || | |||| Sbjct 35869 TGCCCTCCACTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC-GAGGATCA 35927 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | | ||||| ||||||||||| | | ||| || | || | |||||| Sbjct 35928 CACCACCTGAGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGATGGC 35983 >seq152 Length=71250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 60411 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 60352 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 60351 CCGGTAGGAGCTT 60339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 61248 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 61189 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 61188 CCGGTAGGAGCTT 61176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628010317195200