Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq439 253 3e-62 seq55 145 9e-30 seq12 118 1e-21 >seq439 Length=25118 Score = 253 bits (280), Expect = 3e-62 Identities = 960/1485 (65%), Gaps = 50/1485 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| |||||| ||||| | |||| ||||| |||| ||| || || || || Sbjct 17819 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAA 17878 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || |||||||| |||| || || ||| || ||||| | | | | | ||| Sbjct 17879 GCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTTCTCC 17938 Query 118302 TTGAGAGCGTCCCAGTCGTA-------GTTGA--GCTTTGTCTCCCCCTGCCACATATCA 118352 ||||| | ||||||| | | || || ||| | ||| ||||| || Sbjct 17939 TTGAGGGTAGCCCAGTCCCACAGGCCAGAAGAAGGC---GTCACGCCC---CACATGTCG 17992 Query 118353 AACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC- 118411 ||||||| || ||| | | |||||||| |||| || |||||||| |||||| |||| Sbjct 17993 AACTGGAAGACACCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATA-GGGCCC-CAACT 18050 Query 118412 -CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 || ||| | || || ||| | || ||| || || || || || ||| Sbjct 18051 CCTTCGCAATCTCCATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCT 18110 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCC 118529 || | | | |||||| | | || |||| || || || ||| || | || Sbjct 18111 TGTTGAGTTCGCTGGCCTGCTGGCTCTCGAACG-GATAGTTCATCAGAATGAACGCGTCA 18169 Query 118530 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTC 118589 || ||||| || ||||||| || | ||||| || | ||| || ||||| ||||| | Sbjct 18170 GCCAGACCCTGAACACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCC 18229 Query 118590 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 ||||||| || | || ||||| ||| | || ||||| || || ||||| Sbjct 18230 ACCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACC 18289 Query 118650 ATTTCATGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 | || | ||||| | ||| | |||||| | ||| || || |||| || || Sbjct 18290 ACCTCGTACAGCTTCTGGTAGCTGAAAACTCC----CTCCTCCACGA---ACTTGGGGAG 18342 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 |||| || |||| ||| ||||||| ||||| | |||||||| || | || Sbjct 18343 CGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTC 18402 Query 118769 CGTGCACAAGTTT---GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||||||||| |||| || || |||| ||||| || || || || ||| Sbjct 18403 ACAGCACAAGTTACTGGAACGG---ATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTT 18459 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 | || |||||||| |||||| | ||| ||||| || | |||| | || || || Sbjct 18460 AGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGC 18519 Query 118886 CTTCCAGACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACT 118941 ||| || | || | ||| | ||| ||| || ||||| || | |||||||| Sbjct 18520 GAACCA--CAGCTGCTG--GGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTCTCGTACT 18575 Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001 | |||||||| ||||||||||||||| | ||| |||| || || || | || | Sbjct 18576 TCTCGTAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTAG 18635 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 | ||||| | | ||| | ||| |||| |||| ||||||||||| || || | || Sbjct 18636 GACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCC 18695 Query 119062 AGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 | | || |||| | || ||| || | | || | | || ||||| || | Sbjct 18696 ACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCT-CGTTACCGTGATTCTTGCGGAGA 18754 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 |||| || || | | ||| ||||||||||| |||||||| | |||| || ||||| Sbjct 18755 TCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTG 18814 Query 119181 CGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 || | || |||||| || || | || || | || || || | | ||| || Sbjct 18815 CGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGG 18874 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG 119297 || || |||| ||| ||||| || || || || || | || | || || | Sbjct 18875 ATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTCGTCGCACGGATATTG 18934 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || || || |||||||| || |||||||| ||||| || |||| | | | || Sbjct 18935 TGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTG 18994 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 ||||||| || |||||||||||| ||| | || | |||||||| |||| ||| Sbjct 18995 TCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGC 19054 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 119476 || | ||||||||||| ||||| || || || || ||||| |||| | || | || || Sbjct 19055 GGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA-AAACTTCTGCGA 19113 Query 119477 CATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 119536 |||| ||||| ||||||| | || ||||| | ||| ||||||| | || Sbjct 19114 CATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCAC 19173 Query 119537 CCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACT 119596 ||||||| ||| | ||| || ||||| || | |||| || | |||||| | Sbjct 19174 GCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCATTGACACGGAAGAGGTATCC 19233 Query 119597 CTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCG 119641 ||||||||||||||| || || ||| | | ||| ||||||| Sbjct 19234 TCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCCG 19278 >seq55 Length=127487 Score = 145 bits (160), Expect = 9e-30 Identities = 355/527 (67%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||||| |||||||| ||||||||||| || | | ||| | ||||| Sbjct 35463 TACTCACCGACCCGTTTCTCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATC 35522 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || ||||| ||||| ||| |||| | ||| || | | || || ||| Sbjct 35523 CAGTCGAATGGATTCTTCACGTTGTAAATCTTGGACACACCCAGTGAGTAAAGCAGGCGA 35582 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | | |||||||| ||||| | | ||| Sbjct 35583 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCTGAGTTCATGCCGATCAACTCCACA 35642 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| | ||| | | |||| | | ||||||| ||||| || || | ||| |||| Sbjct 35643 -GGGAGAGAGTCGCACACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTTCGTG 35701 Query 129967 AATG-GTCTCCGTGCCAGGTCTATT---GCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | | ||| | ||| | | || | || | | | ||| || ||| || | Sbjct 35702 TACGCGGCTCTCCGGCAGCT-TGTTCACGAGCTTCGAGTACATGAGG--CA-GGCGAAAT 35757 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 || ||| | |||||||| ||| ||| | || |||||||||| ||||| ||||||| Sbjct 35758 CCGTGTGCATTCCCTCGTCCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGA 35817 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||| | |||||| |||| || || || || ||||||||||| ||||||| Sbjct 35818 GGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCA 35877 Query 130143 CACACGCGAACGCAAAGAGACGCT-CAGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 130201 | |||||||| | || |||| | | ||| || || | |||| ||||| | Sbjct 35878 CTGCTGCGAACGCCAGCAGCCGCTCCGGGTAAGAAGACACAC-GAGGATCACACCACCTG 35936 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | ||||| | |||||| || | | |||||||| |||| ||| || Sbjct 35937 AGAGCCCAGTTCGCCTTCTTTTGCACACACGGGATCGTCTCGATGGC 35983 >seq12 Length=196586 Score = 118 bits (130), Expect = 1e-21 Identities = 190/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||| ||||| || |||||||||| |||||| |||||||| || |||||| Sbjct 58326 CCCTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTC 58385 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || || || ||||| || |||||||| ||||| Sbjct 58386 TTGAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAGCGAAA 58445 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCACTG 130212 |||| |||||||| || |||| | || | ||| ||||| | | ||||| | Sbjct 58446 GCAACCAGACGCTCCGCGTAGGA-TGACACACGCGGGTCACACCACCTGAGGGCCCAGTT 58504 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 ||||| |||| | ||| || | ||||| ||| || | || | | ||| || | Sbjct 58505 AGCCTTCTTCTGCACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGTCCTTCTC-AA 58563 Query 130273 TGG-ATCTTTGATGTACTTATCTATGAG 130299 ||| || ||||||||| | || ||||| Sbjct 58564 TGGTGTCCTTGATGTACGTGTCGATGAG 58591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413848524720