Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq439 244 1e-59 seq55 127 2e-24 seq51 109 6e-19 seq12 109 6e-19 seq498 82.4 9e-11 >seq439 Length=25118 Score = 244 bits (270), Expect = 1e-59 Identities = 1113/1736 (64%), Gaps = 58/1736 (3%) Strand=Plus/Minus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| | ||||||||||| ||||||| || | ||||| | | | ||||||| Sbjct 19185 ATGATTATGCGCGTGGCTCTCGGTATCCACAAGAGTGACATCAAGGCAGCTCTGGAGACG 19126 Query 104291 TACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGG 104349 ||||| |||||| || | || | |||| |||||| || || || || ||||||||||| Sbjct 19125 TACGAGCTGATGTCGCAGAAGTTT-TTCACTCACGCTACCCCGACGCTGTTCAATGCTGG 19067 Query 104350 TACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAA 104409 ||||||| |||| ||| ||||| ||||||||| | || | |||| ||||| ||| | Sbjct 19066 TACACCACGACCGCAATTGTCCTCTTGCTTCCTGTTGGCGATGCAGGATGACTCGATCGA 19007 Query 104410 CGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGG 104469 || ||||| | || | | | ||||||| ||||| ||||||||||| |||||||| Sbjct 19006 GGGCATCTACGACACCTTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGGAGGTATTGG 18947 Query 104470 GATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAAT 104528 || || || || | | || | || | || || || || || |||||| | Sbjct 18946 CATTAGTATGCACAATATCCGTGCGACGAACAGCT-ACATCCGCGGCACGAATGGTTCCT 18888 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA-- 104586 | |||| ||||| || ||| | | || || || | || || ||||| || | || Sbjct 18887 CCAATGGAATTATCCCCATGTTGAGAGTCTTCAATGATACCGCTCGCTACGTGGACCAGG 18828 Query 104587 -AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 104645 || || || ||||| || |||| |||| || ||||| |||||||| ||| | Sbjct 18827 GAGGAGGCAAGCGCAAGGGCTCCTTCGCCATCTACCTGGAGCCGTGGCACGCCGATGTGT 18768 Query 104646 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCTC 104704 | |||||||| || | || || || ||| |||| | | | |||| || || | Sbjct 18767 TCGAGTTCCTGGATCTCCGCAAGAATCACGGTAACGA-GCTCCACCGTGCTCGTGACTTG 18709 Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 |||| ||| | ||| | || |||||||||||||| || || |||| | |||||| ||| Sbjct 18708 TTCTACGCATTGTGGGTGCCCGATCTCTTCATGAAAAGGGTGGAGGCCAATGGCAAGTGG 18649 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGA 104823 | | || ||||| | | || ||||| |||| ||| ||| | |||||| |||||||| Sbjct 18648 AGTTTGTTCTGTCCTAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGAAGAGTTTGA 18590 Query 104824 AGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC------GA-CTGCGACGGTGCCAG 104876 |||| ||| ||||||||| | ||||| || || || | | ||| |||| Sbjct 18589 GACCCTCTACGAGAAGTACGAGAAGGAAGGGCGTGCTCGCAAGACCATCAACG--CCCAG 18532 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 | || ||||| || || || | | || | || || ||| || | ||||| Sbjct 18531 CAGC-----TGTGGTTCGCGATCCTTGACGCCCAGATTGAAACGGGTGTGCCTTTCATGC 18477 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | ||||| ||||| ||||| || || || |||| ||||| |||| ||| Sbjct 18476 TCTACAAGGACGCAGCTAACCGCAAATCCAACCAGCAGAACCTGGGTACGATC---CGTT 18420 Query 104997 CCAATCTC-TGTAC--AGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 ||| | | ||| | || | |||| | || ||||| ||||||||| | Sbjct 18419 CCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTCCCGATGAAGTGGCTGTGTGCA 18360 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA-TTAT 105112 | | || || |||| |||||||||| ||||| ||| || ||| | || Sbjct 18359 ATTTGGCCTCTGTCGCGCTCCCCAAGTTCGTGGA---GGAG----GGAGTTTTCAGCTAC 18307 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | || || |||| || || || || || || |||| || || || Sbjct 18306 CAGAAGCTGTACGAGGTGGTCAAGGTGGTGACGCGTAATCTGAACAAGGTCATCGACGTC 18247 Query 105173 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232 || | |||||||| | | ||||| || || || ||| | ||||| || | ||| || Sbjct 18246 AACTACTACCCCGTGGTGGAGGCTCGCAAGTCCAACATGCGCCACCGCCCCGTCGGTATC 18187 Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 105292 |||||||||||||| || || | |||||||| | | | || || | | | Sbjct 18186 GGTGTTCAGGGTCTGGCTGACGCGTTCATTCTGATGAACTATCCGTTCGAGAGCCAGCAG 18127 Query 105293 GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG--A 105350 || | ||| |||| | ||| || |||||||| || ||| | | ||| || Sbjct 18126 GCCAGCGAACTCAACAAGAACATCTTCGAGACCATCTACTACGGTTCCATGGAGACGTCG 18067 Query 105351 GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 105410 | ||| | | || |||| || || ||||| || || |||| || ||||| | | Sbjct 18066 ATGGAGATTGCGAAGGAGTTG--GGGCCCTATGAGACGTTCCAGGGCTCGCCAGC-TAGC 18010 Query 105411 AAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT-----CACTACGACT 105464 ||||| || | || || || ||||||| |||| || ||| | | |||| Sbjct 18009 AAGGGTGTCTTCCAGTTCGACATGTGGG-GCGTGACGCC-TTCTTCTGGCCTGTGGGACT 17952 Query 105465 GGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||| | |||||| ||||| |||| || | |||||||| ||| || || ||| Sbjct 17951 GGGCTACCCTCAAGGAGAACGTGATCA---AGCACGGTCTTCGCAACTCGCTGCTGGTGG 17895 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || || || || || || ||| |||| || || || | | || || | Sbjct 17894 CTCCCATGCCGACGGCTTCTACTGCTCAGATCCTGGGCAACAACGAGTCTATCGAGCCGT 17835 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||||| | ||||| || | | || || || ||||| ||| || |||||| Sbjct 17834 ACACGTCCAACATGTACAACCGTCGTGTGCTTGCAGGCGAGTTCACGATCGTGAACAAGT 17775 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 | || || | || || | || | ||| ||||| | ||| || | | || Sbjct 17774 ACCTGATGAACGAGCTGATCGATCTGGGTATCTGGACGCCGGAGGTGCGCAACCAGATCC 17715 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 |||| | || || ||| | || || | || || || | | | ||| || || Sbjct 17714 TGAACGACGGCGGCTCCGTGCAGAACGTGAAGGTAATCCCGGACCACGTCAAGGAGAAGT 17655 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || || ||||| |||||| ||||| ||| | ||| || | || || ||||| Sbjct 17654 ACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTGCTGGACCTGTCTGCCGACCGTGGCG 17595 Query 105822 GCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGC 105881 || |||| || ||||| | || || ||| | || ||||| ||||| Sbjct 17594 CCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACGATTAGCAAGC 17535 Query 105882 TCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || | || |||||| | ||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 17534 TCACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACGGGCATGTACTAC 17479 >seq55 Length=127487 Score = 127 bits (140), Expect = 2e-24 Identities = 164/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 |||||| | || | |||||| | |||||||| ||| | |||||| | | ||||| |||| Sbjct 35983 GCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGAT 35924 Query 94783 ACAAAGTCGCGTTCCTTTG----CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTAT 94838 | ||| || ||| | ||||| || | || || || || ||||| || Sbjct 35923 CC----TCGTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCAT 35868 Query 94839 CTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 94898 ||||||||| || || |||||| | || | |||||||||||||| || |||||||| || Sbjct 35867 CTTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGG 35808 Query 94899 TCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||||| |||||| | ||| || ||||||||| | ||| Sbjct 35807 TCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCAC 35762 >seq51 Length=98038 Score = 109 bits (120), Expect = 6e-19 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC--GACTTCAAAGA 9761 || ||||||||||| ||||||| ||||| ||| | ||| ||| | |||| | |||| Sbjct 35204 GCGTCAATCTCATCGATGAAGATAATGCACGGT-GCTTTCCGCTTGGCTGACT-CGAAGA 35261 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || ||||| ||||| ||||| || |||||||| |||| | | |||| Sbjct 35262 GGTCACGCACACGACGTGCGCCAACACCGACGTACATCTCCTCAAACTCCGATCCGGACG 35321 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| ||| || ||| |||||||| || ||||| || || |||||||||| Sbjct 35322 AGTAGAAGAAGGGCACACCAGCTTCGCCCGCAATAGCACGGGCCAGCAGCGTCTTACCCG 35381 Query 9882 TACCTGGC 9889 |||| ||| Sbjct 35382 TACCAGGC 35389 >seq12 Length=196586 Score = 109 bits (120), Expect = 6e-19 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| ||||||| | || || | || ||| | Sbjct 58591 CTCATCGACACGTACATCAAGGACACCATTGAGAAGGACCACCTTCTGCGTGCTATCGAG 58532 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || |||| ||| | || ||||| || | ||||| | | ||||| ||| | || | Sbjct 58531 ACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTGGTGTGACCCGC-GT-G 58474 Query 94792 CGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 || |||| || ||||| || | || || || || ||||| || ||||| || | Sbjct 58473 TGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGGGCATTTTCTTTTCGG 58414 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||||||||| | || | |||||||||||||| || |||||||| ||||| |||||| Sbjct 58413 GATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTGAGCTTCT 58354 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 | |||||||| || ||||||||||| Sbjct 58353 CGAACGAGCTCATTAGCCGTGACGAGGG 58326 >seq498 Length=21154 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 |||||||||| || ||||| || || || |||||||| || ||||||| | | | Sbjct 3337 CCACGGCATCGATTTCATCGATAAACACAATGCATGGAGCGTTCGCGCGAGCCTCCTTGA 3278 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | | || || ||||| | |||||||| ||||||||||| | || | | ||| Sbjct 3277 ACAAGTCACGCACACGAGACGGACCCACACCGACAAACATCTCGATGAAATCCGAACCGG 3218 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || || ||| || || | | ||||| ||| |||| ||| || || || |||| Sbjct 3217 AAATGCTGAAGAACGGCACGCTCGCCTCACCAGCAGTGGCCTTGGCCAGCAGCGTTTTAC 3158 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||| ||| || | || || ||||| || |||||||||||| Sbjct 3157 CCGTACCGGGCGGGCCAACAAGCAGAGCACCCTTGGGGATCTTGGCGCCA 3108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240662920880