Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1294 105 2e-17 seq2349 91.5 4e-13 seq58 89.7 2e-12 >seq1294 Length=4314 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | || || || || |||||||||||||| || || || || || || Sbjct 4295 CATGCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 4236 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| | || ||||| ||||| Sbjct 4235 GCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 4176 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || || || || || Sbjct 4175 AGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTC 4116 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || | || || ||||| |||||||| Sbjct 4115 CACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 4065 Score = 104 bits (114), Expect = 7e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | || || || || |||||||||||||| || || || || || || Sbjct 4067 CATGCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 4008 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| | || ||||| ||||| Sbjct 4007 GCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 3948 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || || || || || Sbjct 3947 AGGAATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTC 3888 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || | || || || || ||||||||| Sbjct 3887 CACGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATT 3836 >seq2349 Length=1334 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 522 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 581 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 582 CCCTGCTTCTCCA 594 >seq58 Length=93020 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 87312 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 87253 Query 74548 TCGGGCA 74554 ||||||| Sbjct 87252 TCGGGCA 87246 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 88192 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 88133 Query 74548 TCGGGCA 74554 ||||||| Sbjct 88132 TCGGGCA 88126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515200777987886