Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1294 87.8 1e-12 >seq1294 Length=4314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| || ||||| |||||| || ||||| || || || || || Sbjct 4282 AGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGA 4223 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 4222 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCC 4163 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || | ||| |||||| |||| || Sbjct 4162 TTGTCCTGAATCTTCTG-CTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGT 4104 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || || || |||||||| ||||||||| Sbjct 4103 GATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 4064 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| || ||||| |||||| || ||||| || || || || || Sbjct 4054 AGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGA 3995 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 3994 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCC 3935 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || | ||| |||||| |||| || Sbjct 3934 TTGTCCTGAATCTTCTG-CTTCACGTTGTCGATAGAGTCCGACGGCTCCACGTCCAGCGT 3876 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGA 34711 ||||| || || || || || ||||| || ||||||| |||||| Sbjct 3875 GATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATTGTTGA 3831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719005611546