Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1848 217 1e-51 >seq1848 Length=2031 Score = 217 bits (240), Expect = 1e-51 Identities = 404/587 (69%), Gaps = 6/587 (1%) Strand=Plus/Plus Query 6542 AGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCA 6601 ||| |||| | ||||||||| || | ||||||||| || | ||| || | ||| ||| Sbjct 340 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 399 Query 6602 GGAACCAACCCCACGACATGAGCGATCATGTACGTG--AGCAGAGCGTAACTAGCAATGT 6659 || || ||| | || || || | || || |||| ||||| |||||||| || |||| Sbjct 400 GGCTTCAGCCCAGCCACTTGTGCCACCA-GT-CGTGTAAGCAGTGCGTAACTGGCGATGT 457 Query 6660 TGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCC 6719 |||| ||||| || | |||||||| |||| ||||| || | ||||||||||| ||||| Sbjct 458 TGAATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCC 517 Query 6720 CATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGAT 6779 ||| || |||||||| ||||||| ||||||| || || | ||||||| |||| Sbjct 518 CATCAGCCACGTAGAACTGGCAGAACATGTGGCAGGGAGGCAACGCCATCTCGTTAAGAT 577 Query 6780 CCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGT 6839 | ||||||||||| ||| ||| || || | |||| || ||| ||| | Sbjct 578 CAGCAGGGTTCCACGCCGACAACACAATTCTGCGGTCAGTTGGATTCGTACGCAATTTTG 637 Query 6840 CGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA 6898 |||||| | | || ||||||||| | || || || || || || || | | || Sbjct 638 TGATCAC-TTCAGCAAGCTGGTCCACACCTTGACCAGAGTAATCAGCGTGCATATCCGTG 696 Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 |||| || |||||||| | ||||||||| ||||||||||| || | ||| || | || Sbjct 697 TACTTGGCACCAAAGTGACGCCACTGGAAACCGTAGACCGGCCCGAGGTCCCCAACTTCT 756 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| | | || || |||| ||| | |||||||| |||| |||||||||| | Sbjct 757 CGATCCTGTAGTCCTCGACTGTCGAGATACTCTCGAGATCCGTTGCCGTCCCAGATGTGA 816 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 | || | ||| | | | ||| | || || | ||||||||||||||| Sbjct 817 ATTTCCTTCTGCTGCAGCGTGTGTGCACTAGTGTCGCCACTAATAAACCACAGCAGCTCC 876 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || | || || |||| | || | || |||||||||| |||||| Sbjct 877 TCAGCTACACCACGCCAGAAAACTCTCTTGGTCGTCAGCAACGGAAA 923 Score = 217 bits (240), Expect = 1e-51 Identities = 404/587 (69%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 |||||| |||||||||| || | || | |||| || || | ||||||||||||||| Sbjct 923 TTTCCGTTGCTGACGACCAAGAGAGTTTTCTGGCGTGGTGTAGCTGAGGAGCTGCTGTGG 864 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | || || | ||| | | | ||| | || | | ||||||||| Sbjct 863 TTTATTAGTGGCGACACTAGTGCACACACGCTGCAGCAGAAGGAAATTCACATCTGGGAC 804 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | |||| |||||||| | ||| |||| || || | | ||| || | || ||| Sbjct 803 GGCAACGGATCTCGAGAGTATCTCGACAGTCGAGGACTACAGGATCGAGAAGTTGGGGAC 744 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 | || ||||||||||| ||||||||| | |||||||| || |||| || | | Sbjct 743 CTCGGGCCGGTCTACGGTTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGATATGCAC 684 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 || || || || || || || | ||||||||| || | | |||||| | ||| Sbjct 683 GCTGATTACTCTGGTCAAGGTGTGGACCAGCTTGCTGAA-GTGATCACAAAATTGCGTAC 625 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 ||| || |||| | || || ||| ||| ||||||||||| ||||| ||| Sbjct 624 GAATCCAACTGACCGCAGAATTGTGTTGTCGGCGTGGAACCCTGCTGATCTTAACGAGAT 565 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 |||| | || || ||||||| ||||||| |||||||| || |||||||| ||||||| Sbjct 564 GGCGTTGCCTCCCTGCCACATGTTCTGCCAGTTCTACGTGGCTGATGGGGAGTTGTCCTG 505 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 |||| | || ||||| |||| |||||||| | || ||||| |||||||| || ||||| Sbjct 504 CCAGATGTACCAACGTTCGGCCGACATGGGACTTGGAGTGCCATTCAACATCGCCAGTTA 445 Query 34699 CGCTCTGCT--CACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 ||| ||||| |||| || || | || || || | ||| || ||||| ||| | || Sbjct 444 CGCACTGCTTACACG-AC-TGGTGGCACAAGTGGCTGGGCTGAAGCCTGGCGAGTTTGTC 387 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 ||| | || ||||||||| | || ||||||||| | |||| ||| Sbjct 386 CATGTCATTGGCGATGCGCATGTGTATCTGAACCACGTTGAGCCGCT 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246923740640