Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1848 107 2e-18 >seq1848 Length=2031 Score = 107 bits (118), Expect = 2e-18 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || || || ||||| || | | ||||||||||| || Sbjct 340 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 399 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG--AGGAGAGAGTAGCTGGCGATGT 29765 || | ||||| | || || |||| || || |||| || || | ||| |||||||||| Sbjct 400 GGCTTCAGCCCAGCCACTTGTGCCACCA-GT-CGTGTAAGCAGTGCGTAACTGGCGATGT 457 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | || ||||| || || |||||||| | || | ||||| | |||||| || | ||| | Sbjct 458 TGAATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCC 517 Query 29826 CGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCAT 29874 | || |||||| ||||| | ||||| ||||| ||||| | ||||| Sbjct 518 CATCAGCCACGTAGAACTGGCAGAACATG---TGGCAGGGAGGCAACGCCAT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406149527785132