Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-21 >seq12 Length=196586 Score = 118 bits (130), Expect = 1e-21 Identities = 355/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 48174 CTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAAT 48233 ||||| | ||||| || || | ||||| ||||| || || || || |||||||| || Sbjct 58338 CTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAG 58397 Query 48234 ATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC 48293 || | ||| ||||| |||||||| ||||| || || || || || || || | | Sbjct 58398 ATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCACCGCAGCGAAAGCAACCAGACGC 58457 Query 48294 TCTCCGTAAC-TGGCTTCGTTGTGTATC--CACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350 || |||| || | | || | |||| | ||||| | ||||||||||| Sbjct 58458 TCCGCGTAGGATGACACACGCGGGTCACACCACCTGAGGGCCCAGTTAGCCTTCTTCTGC 58517 Query 48351 ACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACG 48410 ||||| || || || || |||||| | || || || ||| || | || || | | Sbjct 58518 ACACAGGGAATGGTCTCGATAGCACGCAGAAGGTGGTCCTTCTCAATGGTGTCCTTGATG 58577 Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || || || || | || || | || |||||||| || ||||| || ||||| || Sbjct 58578 TACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAATGTTCTCAATGGCAATCTGGAAG 58637 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAAT 48528 ||||| || || | ||||| | | ||| ||||| | | || ||||| |||| | Sbjct 58638 CCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGT 58695 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATT 48588 |||| || || || || || || ||||| || || || | || || || || |||| Sbjct 58696 TCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGAGCACGTGCTTGATGAAATGGC 58755 Query 48589 TTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 48648 ||||| || || || |||||| || | || | | ||| | || |||| Sbjct 58756 GCTCGTTATCCGTGAGGTTGCCCCAGTCCTTCAGGTCGTGCACGAGATCAAGCTCCTCAG 58815 Query 48649 CTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTG 48708 | ||||| || || ||||| || || || ||||| | ||| | ||| | ||||| | Sbjct 58816 CCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACATCTGCCACACCTCATGCTCCTGGATGG 58875 Query 48709 GGAA 48712 |||| Sbjct 58876 GGAA 58879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644816559680