Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq439 104 3e-17 >seq439 Length=25118 Score = 104 bits (114), Expect = 3e-17 Identities = 444/697 (64%), Gaps = 10/697 (1%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 |||||| |||||| ||||| | ||| ||||| |||| ||| |||| |||||| Sbjct 18620 CCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATG 18679 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 |||||||| || | ||| | || || | || || | | | || || || Sbjct 18680 AAGAGATCGGGCACCCACAATGCGTAGAACAAGTCACGAGCACGGTGGAGCTCGTTACCG 18739 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||| ||||| |||||||| | | ||| | ||||| || || || || || Sbjct 18740 TGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATG 18799 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | ||| || || |||||||| || | || | || || | ||| | Sbjct 18800 GCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAG 18859 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC--TTC 76847 ||||||||||| || ||||| || || || | |||||| || || || || | ||| Sbjct 18860 ACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGCTGTTC 18919 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 | ||||| ||||| ||| | ||| || ||||| ||| || ||||| | Sbjct 18920 GTC--GCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGG 18977 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGA 76966 |||| | ||||| ||||| ||||||||||| || |||||| ||| | || | || Sbjct 18978 CACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGA 19037 Query 76967 A--AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 | || || |||| ||| | | || || ||||| |||| || || | || | Sbjct 19038 AGCAAGAG---GACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGT 19094 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 ||||||| | || | || | || | ||| || || | | |||| | || || | | Sbjct 19095 GAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCT 19154 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 || || || | ||| || ||||| | ||| || || || ||||| || || || Sbjct 19155 TGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCAT 19214 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | | || | |||| | | ||||| || || || || || |||| ||| |||| Sbjct 19215 TGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGT 19274 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTT 77241 | | |||| ||||| |||| || || | |||||| Sbjct 19275 CCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712909785939840