Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1294 154 1e-32 seq168 150 2e-31 seq122 149 6e-31 seq228 104 2e-17 >seq1294 Length=4314 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 4064 GCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4005 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||||||||| |||| ||||| ||||| | || Sbjct 4004 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGG 3945 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| || || |||||| ||| | | | || ||| || ||||| Sbjct 3944 AATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATAGAGTCCGACGGCTCCA 3886 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || ||||||| ||||| ||||| |||||||| Sbjct 3885 CGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 3837 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 4292 GCCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 4233 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||||||||| |||| ||||| ||||| | || Sbjct 4232 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGG 4173 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| || || |||||| ||| | | | || ||| || ||||| Sbjct 4172 AATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATAGAGTCCGACGGCTCCA 4114 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| ||||| || ||||||| ||||| || || ||||||||| Sbjct 4113 CGTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCATG 4064 >seq168 Length=56023 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||||| |||||||| ||||||||||||||| ||||| Sbjct 52180 GCCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACT 52121 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 52120 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 52061 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || |||||||| ||| | | | | || || ||||| Sbjct 52060 GATGCCCTCCTTGTCCTGAATCTTTTGCTT-GACGTTGTCGATGGAATCCGACGGCTCCA 52002 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || ||||| |||||||||| |||||| ||||| ||||||||| Sbjct 52001 CGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | |||||| |||||||| ||||||||| ||||| ||||| Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || |||||||| ||| | | | | || || |||||| Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTT-GACGTTGTCGATGGAATCCGACGGCTCCAC 52229 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| |||||||||| |||||| ||||| ||||||||| Sbjct 52228 GTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 52180 Score = 132 bits (146), Expect = 4e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||||| |||||||| ||||||||| ||||| ||||| Sbjct 51952 GCCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 51893 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 51892 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 51833 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || |||||||| ||| | | | | || || ||||| Sbjct 51832 GATGCCCTCCTTGTCCTGAATCTTTTGCTT-GACGTTGTCGATGGAATCCGACGGCTCCA 51774 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 | || | || ||||| || || || || ||||| ||||| |||||||| || || Sbjct 51773 CGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTTGTC 51719 >seq122 Length=66504 Score = 149 bits (164), Expect = 6e-31 Identities = 152/193 (79%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 11082 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 11023 Query 41733 TCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| ||||| ||||| |||||| || ||||||||| |||||| ||||| || Sbjct 11022 TCAGACGCTGCTGGTCAGGCGGGATTCCT-TCCTTGTCCTGGATTTTCTGCTT-GACATT 10965 Query 41792 GACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 10964 GTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 10905 Query 41851 GAAAATCTGCATG 41863 || ||||||||| Sbjct 10904 AAAGATCTGCATG 10892 >seq228 Length=47695 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 37675 CCACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 37734 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | | Sbjct 37735 GAAAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGG 37794 Query 41753 GG 41754 || Sbjct 37795 GG 37796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462288038954400