Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq1029 113 1e-19 >seq2 Length=292639 Score = 154 bits (170), Expect = 3e-32 Identities = 457/693 (66%), Gaps = 25/693 (4%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| |||||| Sbjct 13364 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCGTCAAG 13423 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || |||||| ||||||||||| ||||| |||||||| || | |||||| || || Sbjct 13424 GTGCGACTCGATATGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 13483 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || |||| | |||| | || || |||| ||| || | || Sbjct 13484 CTTCCACACCTGGCCACTGGTCGGCTCCACCTCACCAGTCAGCATCTTGATCATCGTAGA 13543 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| |||| ||| |||| | || | | || | | || | Sbjct 13544 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATAC--GACTCGACAGAGCACACGTCACT 13601 Query 319230 CAC--GTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-AG 319286 | ||||| | | || |||||||| |||| | || || ||| || Sbjct 13602 GAAATGTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTACGAG-CAGTTCGTCAG 13660 Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAA--- 319343 ||||||| |||| ||||| | | ||||| || ||||| ||||| Sbjct 13661 ACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCCGGGAAAAC 13720 Query 319344 ---CTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 319400 |||| |||| ||| || |||| || ||||||| | | || || || Sbjct 13721 GAACTTC-ACGT--TCTCCGACTCG---AGCTCGTAGTAGGCCTTAGCCTCAGGCTTCTG 13774 Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||||| || || || |||||||| |||||||||| || | |||||| || Sbjct 13775 CTCCACGAACTTCGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGT---TTCGTAGTG 13831 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 |||||| |||||| || ||| ||||| || |||||||| ||||| || | | | Sbjct 13832 GATAATGTTGGTGCAGACCTTGTCAAGGAAACCAGAGTCGTGCGACACCATGATAGAGGT 13891 Query 319521 AACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAAAGA 319578 |||| | | | || ||||||| ||| |||| ||| ||||| ||| | Sbjct 13892 CACGTTCGGCAAGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCCAAG 13949 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 13950 TGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCAGC 14009 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTG 319671 | |||||||| ||||| || || ||||| ||| Sbjct 14010 TCCAGTTTCATCTTCCAACCACCAGAAAGGGTG 14042 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||||||||||||| ||| |||||||||||||| || ||||| || Sbjct 14222 GGGGAAACCCTCAAGCTGGCCGTTGGAAATGGCGCGCATCAGGGTCGACTTACCACAACC 14281 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || |||||||||||||| |||| ||| || ||||| | || | ||||||||| Sbjct 14282 GTTGGGGCCACACAGACCGTAACGGTGTCCACGCTTCAGACGAAGGCGGGCGTTGTTCAG 14341 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 |||||| | ||||| || || || || || ||||| Sbjct 14342 AAGAATCATACCACCGTAGGCAAGCGAGAACTCACA 14377 >seq1029 Length=6357 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 291 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 232 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 231 CCCACGGTGGGC 220 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 845 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 786 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 785 CCCACGGTGGGC 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057786484271840