Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq492 192 7e-44 >seq492 Length=38611 Score = 192 bits (212), Expect = 7e-44 Identities = 405/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || ||||| || || | ||| |||| || || || Sbjct 26290 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 26231 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || |||| || | || ||||| | ||| ||||| ||||| Sbjct 26230 GGCTTCAGCCCAGCCACTTGCGCCACCA-GTCGTGTAAGCAGTGCGTAACTGGCGATGTT 26172 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| |||| || ||||||| ||||||||| | |||||| Sbjct 26171 GAATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCCC 26112 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | ||||||||||||||||| | | ||||||||| |||| ||||| || || || Sbjct 26111 ATCAGCCACGTAGAACTGGCAGAACATGTGGCAGGGAGGCAACGCCATCTCGTTAAGATC 26052 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTGATCTC 145979 || |||||||| || | | || | | |||| || || ||| | | | Sbjct 26051 AGCAGGGTTCCACGCCGACAACACAA---TTCTGCGGTCAGTTGGATTCGTACGCAATTT 25995 Query 145980 CCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCA 146038 |||| || ||||||||||| || || || |||||| | | || | ||| Sbjct 25994 TGTGATCACTTCAGCAAGCTGGTCCACACCTTGACCAGAGTAATCAG-CGTGCATATCCG 25936 Query 146039 CGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCT 146098 |||| ||| || ||||| | ||||||||| |||||||| ||||| |||||||| | Sbjct 25935 TGTACTTGGCACCAAAGTGACGCCACTGGAAACCGTAGACCGGCCCGAGGTCCCCAACTT 25876 Query 146099 CCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 | | | | || || | | |||| | || || || |||||| |||||||||| | Sbjct 25875 CTCGATCCTGTAGTCCTCGACTGTCGAGATACTCTCGAGATCCGTTGCCGTCCCAGATGT 25816 Query 146159 TGACGCCCCTC-GC-GGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAG 146216 | || || || | || | | || | | ||| || || || ||||| ||||| Sbjct 25815 GAATTTCCTTCTGCTGCAGCG-TGTGTGCACT-AGTGTCGCCACTAATAAACCACAGCAG 25758 Query 146217 CTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| || || || | |||||| || |||||||| ||||||| || ||| Sbjct 25757 CTCCTCAGCTACACCACGCCAGAAAACTCTCTTGGTCGTCAGCAACGGAAAC 25706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590056383342720