Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 318 6e-82 seq21 295 7e-75 seq165 159 4e-34 seq692 127 2e-24 seq89 125 7e-24 seq42 102 8e-17 >seq7 Length=190069 Score = 318 bits (352), Expect = 6e-82 Identities = 587/850 (69%), Gaps = 22/850 (3%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||| |||| ||| |||||| | |||||||| || | | || |||||| |||||| Sbjct 52642 GAGAATCCCCACCGCTTCGTGCTCTTCCCCATCCAGGAGCATGAGGTGTGGCAGATGTAC 52583 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || ||||| ||||| || |||||||| | |||||| | || || || || | || || Sbjct 52582 AAGAAGGCGGAGGCTTCCTTCTGGACGGCTGAGGAGCTTGATCTCGTGCACG-ACCTGAA 52524 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | || ||||||||||||||||||||||||||||| || || || Sbjct 52523 GGACTGGGGCAACCTCACGGATAACGAGCGCCATTTCATCAAGCACGTGCTCGCTTTCTT 52464 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| ||||||||||| ||||| |||||||| |||| | | ||| | |||||||| Sbjct 52463 CGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAGGTGCA 52404 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| | || || || |||||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 52403 GGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATTCACTCGGA 52344 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTT 116946 | || ||| ||||||||||||||| | | | | ||| || | | || | Sbjct 52343 GGTCTACTCGCTGCTCATCGACACGTACATCAAGGACACCATTGAGAAGGACCACC---T 52287 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 || || |||||||| || || || || | ||||||| | ||||| || | || Sbjct 52286 TCTGCGTGCTATCGAGACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGGCCCTCAGGTG 52227 Query 117007 G-ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 | | || || | | | | ||| || ||||| ||||| || ||||| || || |||| Sbjct 52226 GTGTGACCCGC-GTGTGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCTGCGGTGGAGG 52168 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || | ||||||||||| ||| | |||| || ||||||||||| ||||||||||||| Sbjct 52167 GCATTTTCTTTTCGGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 52108 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || |||| ||| ||||||||||| | | |||||||| |||| ||| || | Sbjct 52107 CTGGTCTGAGCTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACCGATTTCG 52048 Query 117186 CCTGTTTGCTG---TTCAAGCATTTGGTGCAGC-GACCGAGCGCGGCGCGCGTCAGGGAG 117241 | || | ||| | ||||| | ||| | | ||| || ||| || ||| Sbjct 52047 CGTGCCTCCTGTACTCCAAGCTCGTCAACAAGCTGCCGGAGAGC----CGCATCCATGAG 51992 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 ||||| | |||| || | |||||||| || | || |||| |||||| Sbjct 51991 ATCGTTCGCAACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCGCTTCCGGTGGAG 51932 Query 117302 CTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTG 117361 ||| | || | || | | |||| || ||||||||||| || || ||| | ||| Sbjct 51931 CTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTGTGGCTGACCGCCTG 51872 Query 117362 CTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC--CAACCCGCTGGACTTTATGA 117419 ||| | |||| || ||||| |||| |||||| |||||| | |||| ||| Sbjct 51871 CTGTACTCTCTGGGCGTGTCCAAGATCTAC--CACGCCAAGAACCCGTTCGACTGGATGG 51814 Query 117420 ACCTCATCTC 117429 || | ||||| Sbjct 51813 ACATGATCTC 51804 >seq21 Length=128421 Score = 295 bits (326), Expect = 7e-75 Identities = 420/589 (71%), Gaps = 14/589 (2%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||||| Sbjct 37292 GAACCCCAACCGTTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAA 37233 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 || |||||||| || |||||||| | |||||| | |||||| | ||| || ||| Sbjct 37232 GAAAGCCGAGGCATCTTTCTGGACTGCCGAGGAACTCGACCTGGTACACGACCTGAACGA 37173 Query 116713 CTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||| ||| ||| ||||| |||||||| ||||||||||||||||| |||||||| Sbjct 37172 CTGGGCCAAGC---TGACGGACAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTT 37116 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| || || ||||| ||||| |||||||| || | | | ||| | ||| | || Sbjct 37115 CGCAGCAAGTGACGGTATCGTTAACGAGAACCTAGCCATGAACTTCAGCAATGAGATCCA 37056 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| ||||||| || ||||||||||| || ||||| ||||| ||||| | |||||||| Sbjct 37055 GGTGCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGA 36996 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTT 116949 | | || || || |||||||||||| | | | ||||| | || | Sbjct 36995 AGTTTACTCCCTGCTGATCGACACGTACATCAAGGACACAGTCGAGAAAGATTATCTGCT 36936 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG--- 117006 | |||||||||||||| ||||| || || ||||||| | ||||| || | || Sbjct 36935 GCGTGCCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTG 36876 Query 117007 -GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| | | | | | | | | ||||| ||| |||| ||||| || || |||| Sbjct 36875 TGATCCTC----GTGTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGG 36820 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || ||||||| ||||| ||| | | || || ||||||||||| ||||||||||||| Sbjct 36819 GCATCTTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGC 36760 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 | || || | ||| |||||| | ||| | |||||||||| |||| Sbjct 36759 CTGGTCTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCA 36711 >seq165 Length=56023 Score = 159 bits (176), Expect = 4e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || || ||| ||||||| || | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | |||| ||||| |||| |||| ||||| ||||||||||| | || Sbjct 51782 TCGGATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 51840 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| || | ||||| || | ||||| Sbjct 51841 CCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTA 51900 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| | ||| || | |||||| Sbjct 51901 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 51952 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| || | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||| |||| ||||| ||||||||||| | ||||| Sbjct 52241 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52299 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52300 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52359 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| | ||| || | ||||| Sbjct 52360 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGG 52407 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | ||||| || || || ||| | ||||| || | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||| |||| ||||| ||||||||||| | ||||| Sbjct 52013 GATTCCATCGACAACG-TCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 52071 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| || | |||||||| Sbjct 52072 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAA 52131 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| | ||| || | |||||| Sbjct 52132 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGTGGCGGC 52180 >seq692 Length=12785 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 10804 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 10863 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| || || ||||| | |||||| Sbjct 10864 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 10923 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 10924 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 10983 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 10984 ATCCAGAAGG 10993 >seq89 Length=77706 Score = 125 bits (138), Expect = 7e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || || | ||||| || || ||||| | ||||| || | Sbjct 73875 AACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCC 73816 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | ||| | | |||| | ||| | || |||| ||||| |||||||| || | | Sbjct 73815 GTCGGACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTG 73757 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| ||| | |||| ||| ||||| |||||||| |||| || || || | ||||| Sbjct 73756 ACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACT 73697 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| | || || || || ||| |||| || | || ||| Sbjct 73696 ACAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 73644 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || ||||| | ||||| || | | Sbjct 73643 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73584 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| |||||||| || | ||||| Sbjct 73583 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 73525 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| || || || | ||||||||| Sbjct 73524 GCAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAA 73465 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || ||| |||| || | || ||| Sbjct 73464 CATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGGC 73416 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || || ||||| | ||||| || | | Sbjct 73415 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73356 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| |||||||| || | ||||| Sbjct 73355 GACTCTATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 73297 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| || || | | ||||||||| Sbjct 73296 GCAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAA 73237 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || ||| |||| Sbjct 73236 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCG 73201 >seq42 Length=107536 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 97512 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 97453 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 97452 ACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 97393 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 97392 GGTGGTGGC 97384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201373415680