Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq89 167 2e-36 seq165 132 3e-26 seq692 127 1e-24 seq42 87.8 1e-12 >seq89 Length=77706 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | |||| || ||||| |||||||||||| | Sbjct 73417 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 73476 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || |||||||||||||| || Sbjct 73477 AGCGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGGA 73536 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || || || | || || ||| Sbjct 73537 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACG 73596 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || || || || | ||| ||||||||||||||||| Sbjct 73597 TCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73643 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | |||||||||||| | ||| || ||||| |||||||||||| Sbjct 73188 TCCGCCACGTAGACGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 73247 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | ||| |||| |||| ||||||||| ||||| || |||||||||||||| || Sbjct 73248 CAACGTACGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGAGG 73307 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||||| | | | | || || || | || || || Sbjct 73308 AATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCAC 73367 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||| || || || || | ||| ||||||||||||||||| Sbjct 73368 GTCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACAAAGATCTGCAT 73415 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 73645 CCACCGCGCAGTCGCAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 73704 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||| ||||||||| ||||| || | ||||||||||| || Sbjct 73705 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGA 73764 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || || || | || || ||| Sbjct 73765 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATAGAGTCCGACGGCTCCACG 73824 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || || || || | ||| ||||| ||||||||||| Sbjct 73825 TCCAGCGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCAT 73871 >seq165 Length=56023 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 51951 CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 51892 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || ||||||||||| || Sbjct 51891 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 51832 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | | || ||||| | || || ||| Sbjct 51831 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACG 51772 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || ||||| ||||| || || || |||||||||||| Sbjct 51771 TCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATC 51724 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 52407 CCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 52348 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || ||||||||||| || Sbjct 52347 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52288 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | | || ||||| | || || ||| Sbjct 52287 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACG 52228 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || | || || || ||||||||||| Sbjct 52227 TCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 52181 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 52179 CCGCCACGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTC 52120 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || ||||||||||| || Sbjct 52119 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGG 52060 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | | || ||||| | || || ||| Sbjct 52059 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATCCGACGGCTCCACG 52000 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || | || || || ||||||||||| Sbjct 51999 TCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 51953 >seq692 Length=12785 Score = 127 bits (140), Expect = 1e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 10991 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 10932 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| || |||||||| || || ||||| | || | | Sbjct 10931 AGACGCTGCTGGTCAGGCGGGATTCCT-TCCTTGTCCTGGATTTTCTGCTTGACATTGTC 10873 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| ||||| || || || |||||||| Sbjct 10872 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 10813 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 10812 GATCTGCAT 10804 >seq42 Length=107536 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 97388 CCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 97447 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 97448 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 97500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061101166080