Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq492 122 2e-22 seq439 95.1 2e-14 >seq492 Length=38611 Score = 122 bits (134), Expect = 2e-22 Identities = 433/668 (65%), Gaps = 18/668 (3%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || ||||||||||| | || | |||||| | || |||||||| | | | ||||| Sbjct 25644 ACGGGAACAGGAACGTTGTCGGTGTTTGGAGCGCAGATGAGGTTTAATTTGAGGAACGAC 25703 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 |||| | || || ||||||| | |||||||| | || || | || || || | Sbjct 25704 GTGTTTCCGTTGCTGACGACCAAGAGAGTTTTCTGGCGTGGTGTAGCTGAGGAGCTGCTG 25763 Query 35279 TGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGG 35338 ||||| || || ||| | || || | || ||||| | || ||||||||| Sbjct 25764 TGGTTTATTAGTGGCGACACTAGTGCACACACGCTGCAGCAGAAGGAAATTCACATCTGG 25823 Query 35339 AACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGA 35398 ||| || || || || || | | | |||||| |||| || | ||| ||| || || Sbjct 25824 GACGGCAACGGATCTCGAGAGTATCTCGACAGTCGAGGACTACAGGATCGAGAAGTTGGG 25883 Query 35399 GATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA---TGATACC 35455 || | || || || ||||| ||||| |||||||| |||||||| | || |||| Sbjct 25884 GACCTCGGGCCGGTCTACGGTTTCCAGTGGCGTCACTTTGGTGCCAAGTACACGGATA-- 25941 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || | | ||||| |||| | ||| | || || | || | | | | | || Sbjct 25942 TGCAC-GCTGATTACTCTGGTCAAGGTGTGGACCAGCTTGCTGAAGTGATCACAAAATTG 26000 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | |||||| ||| | || || | || |||| ||||| ||| |||||| || Sbjct 26001 CGTACGAATCCAACTGACCGCAGAATTGTGTTGTCGGCGTGGAACCCTGCTGATCTTAAC 26060 Query 35576 CTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 ||||| | ||||| ||||||||| |||| || || || |||||| |||| || || Sbjct 26061 GAGATGGCGTTGCCTCCCTGCCACATGTTCTGC-CAGTTCTACGTGGCTGATGGGGAGTT 26119 Query 35635 GTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 ||| |||||| |||| || || || || ||| || | || ||||| ||||| || Sbjct 26120 GTCCTGCCAGATGTACCAACGTTCGGCCGACATG--GGACTTGGAGTGCCATTCAACATC 26177 Query 35693 GCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAG 35752 || ||| | || || || | ||| |||| ||| || || || || || ||| Sbjct 26178 GCCAGTTACGCACTGCTTACACGACTGGTGGCGCAAGTGGCTGGGCTGAAGCCTGGCGAG 26237 Query 35753 TTTATCC---TCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAG 35809 ||| ||| ||| |||| || || || | ||| | |||| ||||| | | | Sbjct 26238 TTTGTCCATGTCA---TTGGCGATGCGCATGTGTATCTGAACCACGTTGAGCCGCTTCAA 26294 Query 35810 AAGCAGTT 35817 |||||||| Sbjct 26295 AAGCAGTT 26302 >seq439 Length=25150 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 93538 CCCAGTTTTATGAGCTCTCTAATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGT 93597 ||||| | || ||||| | |||| || | |||||| | ||| |||| ||| Sbjct 17769 CCCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGC 17828 Query 93598 ACATTACGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATC 93657 ||| ||| || |||||||||||||| | ||||| | || || ||||||||||||| Sbjct 17829 ACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATC 17888 Query 93658 TGTGCAGTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTTC 93717 || ||||| || || || ||||||||||| || | || || ||| ||| ||| | ||| Sbjct 17889 TGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTG 17948 Query 93718 AT 93719 || Sbjct 17949 AT 17950 Score = 93.3 bits (102), Expect = 8e-14 Identities = 180/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 94783 ATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATA 94842 ||||| | |||||||| |||||||||| || || ||| | || || || || Sbjct 18966 ATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTAGATG 19025 Query 94843 CCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGAC 94901 ||||| || ||||| || | ||| |||||||| ||||| | ||| ||| ||| Sbjct 19026 CCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCGTGG- 19084 Query 94902 TGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATC 94961 ||| ||| ||| ||||| || |||| ||| || || ||| | | | |||||| || || Sbjct 19085 TGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAAAAACTTCTGCGACATCAGCTC 19144 Query 94962 ATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAAT 95021 || || || | | | |||||||| ||| || |||| |||||| |||||||| Sbjct 19145 GTACGTCTCCAGAGCTGCCTTGATGTCACTCTTGTGGATACCGAGAGCCACGCGCATAAT 19204 Query 95022 CATGTCCTGAGGGCGCTCAACCA 95044 ||| | || || || || |||| Sbjct 19205 CATCTGTTGCGGACGTTCCACCA 19227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989548904403440