Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq492 152 4e-32 >seq492 Length=38611 Score = 152 bits (168), Expect = 4e-32 Identities = 398/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || ||||||||||| || || || || || || | | || ||||| || || Sbjct 26290 AGCGGCTCAACGTGGTTCAGATACACATGCGCATCGCCAATGACATGGACAAACTCGCCA 26231 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || | ||| || || || ||||| ||||||||||| Sbjct 26230 GGCTTCAGCCCAGCCACTTGCGCCACCAGTCGTGTAAGCAGTGCGTAACTGGCGATGTTG 26171 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || || ||||||||||| || | ||||||| ||||||||||| |||||| Sbjct 26170 AATGGCACTCCAAGTCCCATGTCGGCCGAACGTTGGTACATCTGGCAGGACAACTCCCCA 26111 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 ||||||||| ||||| || || | ||| || ||||| | |||||| || || Sbjct 26110 TCAGCCACGTAGAACTGGCAGAACATGTGGCAGGGAGGCAACGCCATCTCGTTAAGATCA 26051 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC--GTGGGGCCGCCTGTTAATTAGAT 21222 || ||||||||||| ||| || || | || || ||| || | | || | Sbjct 26050 GCAGGGTTCCACGCCGACAACACAATTCTGCGGTCAGTTGGATTCGTACGCAATTTTG-- 25993 Query 21223 CCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 | ||| | | ||||||||||| || ||||| ||| | |||| || ||| Sbjct 25992 TGATCACTTCAGCAAGCTGGTCCACACCTTGACCAGAGTAATCAGCGTGCATATCCGTGT 25933 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGC 21342 ||| || ||||| || | ||||||||| ||||| |||||||| || || || | | Sbjct 25932 ACTTGGCACCAAAGTGACGCCACTGGAAACCGTAGACCGGCCCGAGGTCCCCAACTTCTC 25873 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCA------A 21395 | | || | || ||| | | | | | | | || || |||| ||||||| | Sbjct 25872 GAT-CCTGTAGTCCTCGACTGTCGAGATACTCTCGAGATCCGTTGCCGTCCCAGATGTGA 25814 Query 21396 ATTT--TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACA 21453 |||| || || || ||| | ||| | | ||| ||| || |||||||||| Sbjct 25813 ATTTCCTTCTGCTGCAGCG-------TGTGTGCACT-AGTGTCGCCACTAATAAACCACA 25762 Query 21454 GCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 ||| |||||| | || || | ||| || || || ||||| || | || |||||| ||| Sbjct 25761 GCAGCTCCTCAGCTACACCACGCCAGAAAACTCTCTTGGTCGTCAGCAACGGAAACACGT 25702 Query 21514 C 21514 | Sbjct 25701 C 25701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427761568976640