Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq439 176 6e-39 >seq439 Length=25150 Score = 176 bits (194), Expect = 6e-39 Identities = 792/1237 (64%), Gaps = 16/1237 (1%) Strand=Plus/Plus Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT-TGTGCTTCTAGGCTATCAAA 79412 ||||| || ||||| ||||| || ||||| ||||| || || || || |||| || || Sbjct 18105 CCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCTGGCCTGCT-GGCTCTCGAA 18163 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 ||||| || | ||||| |||||||| || | || |||||||| ||||||| || | Sbjct 18164 CGGATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAACACCGATACCGACGGGGCG 18223 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 || | | | || || | ||| || | || || || || | || || | || Sbjct 18224 GTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGTAGTTGACGTCGATGACCTT 18283 Query 79533 ATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA-TCAAATCGTC 79591 || ||||| | | || |||||||| || | || || | | | ||| | || Sbjct 18284 GTTCAGATTACGCGTCACCACCTTGACCACCTCGTACAGCTTCTGGTAGCTGAAAAC-TC 18342 Query 79592 CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 | || || ||| || | ||||||||| |||| ||| || || || || |||| | Sbjct 18343 CCTCCTCCACGAACTTGGGGAGCGCGACAGAGGCCAAATTGCACACAGCCACTTCATCGG 18402 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | || || | || | ||| ||| | |||||| | || || || | || | Sbjct 18403 GAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGAACGGATCGTACCCAGGTTCT 18462 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || || || |||| || ||||| || || ||||| || ||| ||||||| Sbjct 18463 GCTGGTTGGATTTGCGGTTAGCTGCGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAA 18522 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT--TATAGACTTGTATC 79828 |||| | || | ||||| ||| | | || | || || || | | | | | | Sbjct 18523 TCTGGGCGTCAAGGATCGCGAACCACAGCTGCTGG-GCGTTGATGGTCTTG-CGAGCACG 18580 Query 79829 TCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | || || | ||||| || | ||| | || || ||||| || ||||| |||| Sbjct 18581 CCCTTCCT-TCTCGTACTTCTCGTAGAGGGTC--TCAAACTCTTCACCCCAGCACTCGTA 18637 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | ||||||| ||| | |||||| | ||| ||||| |||| ||| || | ||| Sbjct 18638 GAGTCCAGGAGCTTCATTAGGACAGAACAAACTCCACTTGCCATTGGCCTCCACCCTTTT 18697 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005 ||| |||||||| || | ||| | || || || || || | | | || ||||| Sbjct 18698 CATGAAGAGATCGGGCACCCACAATGCGTAGAACAAG-TCACGAGCACGGTGGAGCTCGT 18756 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 80065 | || |||||| ||||| |||||| | | | ||| | |||||||| |||| || Sbjct 18757 TACCGTGATTCTTGCGGAGATCCAGGAACTCGAACACATCGGCGTGCCACGGCTCCAGGT 18816 Query 80066 ATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 80125 | ||||| | ||| || ||| ||||||||| || | ||| | |||||| | || Sbjct 18817 AGATGGCGAAGGAGCCCTTGCGCTTGCCTCCTCCCTGGTCCACGTAGCGAGCGGTATCAT 18876 Query 80126 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 80185 | | ||||||||||| || ||||| |||||||| | |||||| || ||| ||| |||| Sbjct 18877 TGAAGACTCTCAACATGGGGATAATTCCATTGGAGGAACCATTCGTGCCGCGGATGTAGC 18936 Query 80186 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 80245 | | ||||| ||||| || | || || || || ||| || ||||| Sbjct 18937 TGTTCGTCGCACGGATATTGTGCATACTAATGCCAATACCTCCAGCCCACTTGGAGATGC 18996 Query 80246 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTA 80305 | || || | || || || || ||||||||||| || ||||| ||| | | Sbjct 18997 AGGCACACTGCTTCAAGGTGTCGTAGATGCCCTCGATCGAGTCATCCTGCATCGCCAACA 19056 Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 | || || |||| ||| | || || || ||||| || | || || | ||||| Sbjct 19057 GGAAGCAAGAGGACAATTGCGGTCGTGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGT 19116 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | || || | || | |||| || | ||||||||| | ||||| | || || | | Sbjct 19117 GAGTGAAAAACTTCTGCGACATCAGCTCGTACGTCTCCAGAGCTGCCTTGATGTCACTCT 19176 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 || || || | || || ||||| | ||| || || || | ||| || | ||| || Sbjct 19177 TGTGGATACCGAGAGCCACGCGCATAATCATCTGTTGCGGACGTTCCACCACTTTGCCAT 19236 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | | || | ||| | | ||||| || || || || || |||| ||| |||| Sbjct 19237 TGACACGGAAGAGGTATCCTCTCTCCAAGGTCTTGAAGCCGAAGTAGTCGTACTCGAAGT 19296 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 | || |||| ||||| |||||||||| | ||||| Sbjct 19297 CCCGGTCGTGGATAATGGCCGAGTTGAGCTCGTCCTT 19333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718243947899520