Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq692 91.5 1e-13 seq165 86.0 5e-12 >seq692 Length=12785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 10993 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 10934 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| || ||| | | |||||||||| ||||||||||||| | Sbjct 10933 TCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 10874 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | |||| | |||| || | || ||||| || || || || || ||||||| Sbjct 10873 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 10814 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 10813 AGATCTGCAT 10804 >seq165 Length=56023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||| || | || || | |||||||||||||| || || Sbjct 51916 CTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGGC-CATCCTCCAGCTGCTTGCCAGCGA 51858 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | ||||||||| || || | | ||||||||| ||| || ||||||| | Sbjct 51857 AGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGT 51798 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || |||| ||| | | |||| |||| || || || || || ||||| || || Sbjct 51797 TGTCG--ATGGAATCCGACGGCTCCACGTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTT 51740 Query 48712 CACAAAAATCTGCATCGTGTCT 48733 || || ||||||||| ||||| Sbjct 51739 GACGAAGATCTGCATCTTGTCT 51718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421236989090768