Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq849 122 6e-23 seq165 82.4 5e-11 >seq849 Length=9929 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 9635 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 9576 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 9575 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 9541 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 7364 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 7305 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 7304 ACCAATATTTAGCTTTA 7288 >seq165 Length=56023 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || || || |||||| ||||| ||||| ||| || | || | || || Sbjct 52162 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTGCGGCCATCCTC 52103 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || || || || || || || || || | |||| ||| || |||||| Sbjct 52102 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 52043 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTT 38286 ||| |||||||| || || | || | ||| | || || || || | ||||| || | Sbjct 52042 AATCTTTTGCTTGACGTTGTCGATGGAATC-CGACGGCTCCACGTCAAGGGTAATCGTCT 51984 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||||| || || ||||| ||||||||| Sbjct 51983 TACCCGTCAACGTCTTGACGAAGATCTGCATG 51952 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| || | || || | ||||| || || || |||||| || || ||||| ||| Sbjct 52410 TTACCGCCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCA 52351 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | || | || || | || || || || || || || || || || || | Sbjct 52350 CTCAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 52291 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TC 38266 |||| ||| || |||||| ||| |||||||| || || | || | ||| | || || Sbjct 52290 GGGATGCCCTCCTTGTCCTGAATCTTTTGCTTGACGTTGTCGATGGAATC-CGACGGCTC 52232 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||||| || ||||||||||| || || ||||| ||||||||| Sbjct 52231 CACGTCAAGGGTAATCGTCTTACCCGTCAACGTCTTGACGAAGATCTGCATG 52180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334935900556208