Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq89 123 2e-23 >seq89 Length=77706 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||| |||| Sbjct 73415 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73356 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| ||||||| || || ||||| || || ||||| |||||||| Sbjct 73355 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 73296 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || || ||||| || | || || | ||| || || |||| ||||| Sbjct 73295 CAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAAC 73236 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || || || || || | ||||| | ||| | || ||||| || Sbjct 73235 ATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCGTCTACGTGGCGGAAACTA 73183 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||||||||| || || || ||||||||||| || || | ||||| | || |||||| | Sbjct 73875 AACAATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCC 73816 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||| ||||||| ||||||| || || ||||| || || ||||| ||||| Sbjct 73815 GTCGGACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGA 73756 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || |||||||| || | || || | ||| || || |||| || Sbjct 73755 CCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTA 73696 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || | ||||| Sbjct 73695 CAACATCCAGAAGGAGTCGACTCTTCACCTGGTGCT 73660 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||| |||| Sbjct 73643 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73584 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| ||||||| || || ||||| || || ||||| |||||||| Sbjct 73583 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 73524 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || || ||||| || | || || | ||| || || |||| ||||| Sbjct 73523 CAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 73464 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 73463 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCT 73432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433313381679920