Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq165 113 4e-20 seq89 95.1 1e-14 seq439 84.2 2e-11 >seq165 Length=56023 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| ||| | || ||||| ||||| | | Sbjct 51953 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52012 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || || Sbjct 52013 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52072 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || |||||| Sbjct 52073 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52132 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 52133 ATTCAGAAGGAGTCGAC 52149 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| ||| | || ||||| ||||| | | Sbjct 52181 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACGATTACCCTTGACGTGGAGCCGTCG 52240 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || || Sbjct 52241 GATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 52300 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| |||||| | || |||||| Sbjct 52301 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTACAAC 52360 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || | || ||||||| ||| Sbjct 52361 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGCGGT 52408 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| | || || || ||||| | Sbjct 51722 AAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATTACCCTCGACGTGGAGCCG 51781 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | ||| | |||| ||||| ||||| ||||||||||| || || || || Sbjct 51782 TCGGATTCCATCGACAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 51841 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || ||||| ||| | |||||| |||||| | || ||| Sbjct 51842 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGAGTGACTAC 51901 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 51902 AACATCCAGAAGGAGTCGAC 51921 >seq89 Length=77706 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || ||| |||| || || ||||| | | Sbjct 73643 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73584 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| ||||| || || || Sbjct 73583 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 73524 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| || || | ||| |||||| Sbjct 73523 CAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 73464 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| ||||||| || Sbjct 73463 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTGCGACTGCGCGGTGG 73417 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || ||| |||| || || ||||| | | Sbjct 73871 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73812 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| ||||| || || || Sbjct 73811 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 73752 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| || || | ||| |||||| Sbjct 73751 CAGCGATTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAAC 73692 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| ||||||| || Sbjct 73691 ATCCAGAAGGAGTCGACTCTTCACCTGGTGCTGCGACTGCGCGGTGG 73645 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || ||| |||| || || ||||| | | Sbjct 73415 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCGTCG 73356 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| ||||| || || || Sbjct 73355 GACTCTATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 73296 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| || || | ||| |||||| Sbjct 73295 CAGCGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGCGACTACAAC 73236 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 73235 ATCCAGAAGGAGTCGAC 73219 >seq439 Length=25150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 237/358 (66%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 128920 GATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACT 128979 || ||||| || ||| ||| ||| || ||||||| || | | || | ||| Sbjct 17595 GACTGACTCTGGCAAATGTAGGCGCCACGGTCGGCAGACAGGTCCAGCACAGCCTTCTGC 17654 Query 128980 TTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTC 129039 || || ||||||||||| ||||| ||| | ||||| | || ||| | | | |||| Sbjct 17655 TTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATTACCTTCACGTTC 17714 Query 129040 TGCAC---GCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAAT-- 129094 ||||| || ||||| ||| | || | ||| |||| | | || || || || Sbjct 17715 TGCACGGAGCCGCCGTCGTT---CAGGATCTGGTTGCGCACC--TCCGGCGTCCAGATAC 17769 Query 129095 TCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA-CTTGAAAGTCACCCGCCAAA 129153 ||| | ||||| |||| ||| ||| ||||| | | | || || || || || | Sbjct 17770 CCAGATCGATCAGCTCGTTCATCAGGTACTTGTTCACGATCGTG-AACTCGCCTGCAAGC 17828 Query 129154 ACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATT 129213 || || || ||| |||||| ||| ||||||| | || || |||||||| | || Sbjct 17829 ACACGACGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTGCCCAGGATC 17888 Query 129214 TGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCT 129271 ||||| || | || || |||||| |||||| |||||||| || | |||||||| Sbjct 17889 TGAGCAGTAGAAGCCGTCGGCATGGGAGCCACCAGCAGCGAGTTGCGAAGACCGTGCT 17946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713840475920