Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 158 2e-33 seq2 154 3e-32 seq21 125 1e-23 seq1029 102 2e-16 seq136 95.1 2e-14 seq134 86.0 1e-11 >seq7 Length=190069 Score = 158 bits (174), Expect = 2e-33 Identities = 565/863 (65%), Gaps = 33/863 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| || Sbjct 51777 TCGAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 51836 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || | ||| ||||| ||| || | ||| | | |||||| ||||||||||| | Sbjct 51837 GCGTGGTAGATCTTGGACACGCCCAGAGAGTAC-AGCAGGCGGTCAGCCACAAACTCGAT 51895 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGAC---AAGGAATTGCCTCAC 251737 ||||| | ||| || | |||||||||||||||| | || ||| | | || ||| Sbjct 51896 GTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCCACCGGAAGCGAATCCCGCAC 51955 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT----TGCCTTCACCTGTGCC 251793 | || || | ||| | | || || | || || || | | || | | Sbjct 51956 A----AACTCGTGCTCGATCACCACAGCGTTGCGAACGATCTCATGGATGCGGCTCTCC- 52010 Query 251794 AGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACC 251852 | ||||||||| | ||||| ||||||||||| | ||| ||| | || |||| || Sbjct 52011 ---GGCAGCTTGTTGACGAGCTTGGAGTACAGGAGGCACGCGAAATCGGTG-TGCATGCC 52066 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| || || |||| |||||| || | | ||| |||||||| | || || ||| | Sbjct 52067 CTCGTCACGGCTAATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTCTT 52126 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACA-CCCATG 251971 |||||||||||| | ||| |||||||| || || | | ||||| || | || | | | Sbjct 52127 GAGCCAGAAGATGGAGCAGAAGGATCCCGAAAAGAAAATGCCCTCCAC-CGCAGCGAAAG 52185 Query 251972 CAACAAGGCGCTCAGCAAACGACTTGTCCTGC--GACA-AGAACTTCTGTGCCCATGCTG 252028 |||| || ||||| || | || | || | || | || | | ||||| | Sbjct 52186 CAACCAGACGCTCCGCGTAGGATGACACACGCGGGTCACACCACCTGAGGGCCCAGTTAG 52245 Query 252029 CCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCA 252087 ||||||| || ||| || || ||||| ||| | ||| | | ||| ||| Sbjct 52246 CCTTCTTCTGCACACAGGGAATGGTCTCGATAGCA-CGCAGAAGGTGGTCCTTCTCAATG 52304 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 ||||| |||| || || | || || ||||| | |||||| || ||| || || Sbjct 52305 GTGTCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCCGAGTGAATGTTCTCAATG 52364 Query 252148 AACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTG 252207 |||||| | | ||||| || || ||| | || || || ||||| Sbjct 52365 GCAATCTGGAAGCCGTAGAAGCAGCGAGCTTCAGGCACCTGCACCTCATTGCTGAAGTTC 52424 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | || | |||||| |||| || || |||||| | || ||||| | || | | |||| Sbjct 52425 ATGGCCAGGTTCTCGTTCACGATACCGTCGCTGGCAGCGAAGAAAGCGAGCACGTGCTTG 52484 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 ||||| || ||||| | || |||| ||| | |||||| | ||| || ||| Sbjct 52485 ATGAAATGGCGCTCGTTATCCGTGAGGTTG---CCCCAGTCCTTCAGGTCGTGCACGAGA 52541 Query 252328 GGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATC 252386 || || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 52542 TCAAGCTCCTCAGCCGTCCAGAAGGAAGCCTCCGCCTTCTTGTACATCTGC-CACACCTC 52600 Query 252387 AGGGTACTTGATTGGGAA-AGCA 252408 | | | || ||| ||||| |||| Sbjct 52601 ATGCTCCTGGATGGGGAAGAGCA 52623 >seq2 Length=292639 Score = 154 bits (170), Expect = 3e-32 Identities = 651/1009 (65%), Gaps = 33/1009 (3%) Strand=Plus/Minus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 ||||||| |||||||| || || ||||| | |||||| || ||| ||||||| Sbjct 14379 ACTGTGAGTTCTCGCTTGCCTACGGTGGTATGATTCTTCTGAACAACGCCCGCCTTCGTC 14320 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 | |||||||| |||| || ||||| || ||||| || |||||| || || | Sbjct 14319 TGAAGCGTGGACACCGTTACGGTCTGTGTGGCCCCAACGGTTGTGGTAAGTCGACCCTGA 14260 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAAC-GCATCTGAGGTAAGGACA 279539 ||||||||||| | ||||| ||||| || || || || | | || | ||| | | ||| Sbjct 14259 TGCGCGCCATTTCCAACGGCCAGCTTGAGGGTTTCCCCAGCCGCGAC-GAGCTGAAGACC 14201 Query 279540 GTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTA 279599 |||| || |||||| || | | | || | || | | || | |||||| | Sbjct 14200 GTGTTCGTTGAGCACAACCTTCAGGCTTCGGAGGCCGAGCTCTCGGTTGTGGACTTCATC 14141 Query 279600 ACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAG 279659 | || || ||| || | | || | | | ||||| ||| | | || | Sbjct 14140 TTGA---ACGATGAGGACCTGAAGAACACCCCGCGCGAGGAGGTCAAGGACACTCTCG-- 14086 Query 279660 GCCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGT 279716 ||| | | ||| | || |||| || | || || | || || |||||| Sbjct 14085 -CCAGCGTCGGTTTCACCCCGGAGATGCAGGCTCAGGGTGTTGGCACCCTTTCTGGTGGT 14027 Query 279717 TGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTT 279776 ||||||||||| |||| || | || || || || | | ||||| | || || ||| Sbjct 14026 TGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATTCTGCTTCTT 13967 Query 279777 GATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACC 279836 |||||||| || |||||| |||| || ||||| |||||||| | | |||||| ||| Sbjct 13966 GATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAACTACCTGACC 13907 Query 279837 AGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 || || ||| || | || |||| || || ||||||||||| ||||| || || Sbjct 13906 AGCTTGCCGAACGTGACCTCTATCATGGTGTCGCACGACTCTGGTTTCCTTGACAAGGTC 13847 Query 279897 TGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAAC 279953 ||| | ||| || ||||| || | || |||||| ||| |||| |||||| Sbjct 13846 TGCACCAACATTATCCACTACGAAACCCGTAAGCTGAAGATCTACAAG------GGCAAC 13793 Query 279954 CTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || || ||||||| || |||||||| |||||||| || || || | Sbjct 13792 CTTTCGAAGTTCGTGGAGCAGAAGCCTGAGGCTAAGGCCTACTACGAGCTCGAGTCGGAG 13733 Query 280014 ACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC-ATCAAAGGATCG 280072 | || |||| | ||||| ||||| || || || | | |||| | ||| || | Sbjct 13732 AACGTGAAGTTCGTTTTCCCGGAGCCTGGTTTCCTTGCTGATATCAAGAACAAGGGTAAG 13673 Query 280073 CGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA--CATCT-T 280129 | || |||| || | ||| | || || | |||||| | || | Sbjct 13672 CCCA-TCATTCGTCTGACGAACTGCTCGTACCAGTACCCGGGTACCCCCAAGCCGTCGAT 13614 Query 280130 CAGCAG--TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTGGTGTCATTGGACCCAA 280186 || || | ||| | | || ||| | | || | || | || | |||||||| Sbjct 13613 CAACAACATTTCAG-TGACGTGTGCTCTGTCGAGTC--GTATCGCCGTGCTGGGACCCAA 13557 Query 280187 TGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGG 280246 ||||| ||||||||||| | ||||| | |||||||| ||| || | || || | Sbjct 13556 CGGTGCCGGTAAGTCTACGATGATCAAGATGCTGACTGGTGAGGTGGAGCCGACC-AGTG 13498 Query 280247 GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACC 280305 | | | | |||||||| || |||||| | || ||||| ||||||||||||||||||| Sbjct 13497 GCCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCTCAGCACGCTTTCCACC 13438 Query 280306 ACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 | |||||| ||||| ||| |||| | ||||| ||||| |||||||| Sbjct 13437 ATATCGAGTCGCACCTTGACGAGACTGCCAACCAGTACATCCAGTGGCG 13389 >seq21 Length=128421 Score = 125 bits (138), Expect = 1e-23 Identities = 553/858 (64%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| || ||||| | ||||| ||||||| || || | Sbjct 36429 TCGAAAAAGTTTGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAATGGATTCTTC 36488 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAG-ATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||||| || |||| || ||| | ||| |||||||| ||||| | Sbjct 36489 ACGTTGTAAATCTTGGACACACCCAGTGAGTA--AAGCAGGCGATCTGCCACGAACTCAA 36546 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| || || ||| | | || || Sbjct 36547 TGTACTGGCACATGAGCGCTGAGTTCATGCCGATCA-ACTCCACAGGGAGAGAGTCGCAC 36605 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | || ||| || || || | ||| | | || | | | | Sbjct 36606 ACGAACTCGTGCTCAATGGTGACAGCGTCGCGGATGATTTCGTGTACGCGGCTCTCCGGC 36665 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 ||||||||| | ||||| ||||||| ||| | || ||| | || ||||| ||||||| Sbjct 36666 AGCTTGTTCACGAGCTTCGAGTACATGAGGCAGGCGAAATCCGT--GTGCATTCCCTCGT 36723 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| | |||||| || | | || |||||||| | || || ||| |||||| Sbjct 36724 CCCGGCTGATCATCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCC 36783 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || ||||| ||||| | | ||||| || | | || | | Sbjct 36784 AGAAGATCGAGCAGAACGATCCCGAGAAGAAGATGCCCTCCACTGCTGCGAACGCCAGCA 36843 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGA----CA-AGAACTTCTGTGCCCATGCTGCCTT 252032 | ||||| | | || | | ||| || | || | | ||||| ||||| Sbjct 36844 GCCGCTCCGGGTAAGA--AGACACACGAGGATCACACCACCTGAGAGCCCAGTTCGCCTT 36901 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 |||| || ||||| || ||||| ||| | ||| | | |||| | ||| Sbjct 36902 CTTTTGCACACACGGGATCGTCTCGATGGCACGCAGCAGATAATCTTTCTCGACTGTGTC 36961 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || || | ||| || ||||| | ||||| ||||| || || || Sbjct 36962 CTTGATGTACGTGTCGATCAGCAGGGAGTAAACTTCCGAGTGGATATTCTCAATGGCTAT 37021 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| || | ||||| || || || | || || || ||||| | || Sbjct 37022 CTGGAAACCGTAGAAGCAGCGGGCCTCGGGCACCTGGATCTCATTGCTGAAGTTCATGGC 37081 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || || || || || |||| || ||| | || | | ||||||||| Sbjct 37082 TAGGTTCTCGTTAACGATACCGTCACTTGCTGCGAAAAAGGCGAGCACGTGCTTGATGAA 37141 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 ||| ||||||| ||| | |||||| | ||||||| | ||| || ||| | Sbjct 37142 GTGGCGCTCATTGTCCGTCAGCTTGGC---CCAGTCGTTCAGGTCGTGTACCAGGTCGAG 37198 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391 ||| || | |||||||| | | | | || ||||||||||| ||| |||| || | | Sbjct 37199 TTCCTCGGCAGTCCAGAAAGATGCCTCGGCTTTCTTGTACATCTGC-CACACGTCGTGCT 37257 Query 252392 ACTTGATTGGGAA-AGCA 252408 || ||| ||||| |||| Sbjct 37258 CCTGGATGGGGAAGAGCA 37275 >seq1029 Length=6357 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 292 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 233 Query 142563 CCCCAC 142568 |||||| Sbjct 232 CCCCAC 227 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 846 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 787 Query 142563 CCCCAC 142568 |||||| Sbjct 786 CCCCAC 781 >seq136 Length=63566 Score = 95.1 bits (104), Expect = 2e-14 Identities = 237/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||| | |||| || ||||| || |||| |||||| ||||| || ||| Sbjct 43467 AAGGTTGCACAGCTCGCTGGATACGTATCTGAGCACTCTGCCTACCACCACGGCGAACAG 43408 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 |||||||| || || ||| |||||| ||||| | || || || ||||| || || Sbjct 43407 AGTCTGCAAGGCTGTATCGTAAACATGGCGCAGGATTTCGTTGGAAGCAACAATATCCAC 43348 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 | ||| ||||| |||||||| ||| | ||| | |||| || ||||| || | Sbjct 43347 CTTCTGTCCCCCATTGGTCAGTTCGGTACACGTTTGATGGGCGGCAAGGACGCGGCCAGT 43288 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC---AGGCC 218892 || | ||||| || || || ||| || | ||||| | | | | ||| || | Sbjct 43287 GCTCGTTATATTTTCACCAACTTGGAGCAGCTTACGCGTCGAATCTACGATCCTTTGGAC 43228 Query 218893 GATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTAT 218952 ||||| || ||| ||||| || || || || || || ||||| || || |||||| Sbjct 43227 AATGAT-TG--CCTGAAGTACCTCGATGAAGACGGCCAGTCCATTGAACCGGAATGGTAT 43171 Query 218953 GTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 | || ||| || | |||| || || || | |||||||| || ||||| Sbjct 43170 ATCCCGATTATCCCCATGGTGCTGGTCAACGGCAGTGACGGTATCGGAAC-GGGTT 43116 >seq134 Length=83514 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || || ||||| ||||| ||||||||||| || |||||||||| || ||| ||||| | Sbjct 27484 ATCCGTGGTCTCTCTGGTGGCCAGAAGGTGAAGCTTGTCATCGCTGCTGCTATGTGGAAC 27543 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCG 280819 | ||| ||| || |||| || || ||||| || ||||| |||| || Sbjct 27544 CGCCCGCACTTGCTCGTGCTGGATGAGCCGACGAACTACTTGGATCG 27590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800347767888